BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0017.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...   474   e-135
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...    77   1e-15
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...    58   7e-10

>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/233 (99%), Positives = 232/233 (99%)

Query: 1   MMEIRKANDRGHANHGWLDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHR 60
           MMEIRKANDRGHANHGWLDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHR
Sbjct: 1   MMEIRKANDRGHANHGWLDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHR 60

Query: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120
           DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM
Sbjct: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120

Query: 121 PDRAGAEPGYQEAHFSAADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTL 180
           PDRAGAEPGYQEAHFSAADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTL
Sbjct: 121 PDRAGAEPGYQEAHFSAADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTL 180

Query: 181 PPGRLGYVHVARGKISVNGQALEAGDAVKLSAVDRIEIGGGDKAEVLLFDLPR 233
           P GRLGYVHVARGKISVNGQALEAGDAVKLSAVDRIEIGGGDKAEVLLFDLPR
Sbjct: 181 PQGRLGYVHVARGKISVNGQALEAGDAVKLSAVDRIEIGGGDKAEVLLFDLPR 233


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112
           GF  H HR  E ++Y+L G + H+D+ GN  ++ PG +Q M+AG G+ HSE    ++G  
Sbjct: 61  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLM 120

Query: 113 HFLQIWIMPDRAG----AEPGYQEAHFSAADKDG-----KLRLVA-SADGRDGSVSMNQD 162
              Q+W+  + AG     EPGYQ+   +   +       ++R++A SA G DG++     
Sbjct: 121 SGFQLWV--NLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATT 178

Query: 163 AQLYAGL-FDGAQTAEYTLPPGRLGYVHVARGKISVNG-----QALEAGDAVKLSAV 213
             LY  L  +   T    +P     +++V  G ++V       +  EAG    LS V
Sbjct: 179 EPLYLDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNV 235


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 57  HGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEY----NHSQDGTT 112
           H H  +  ++Y+  G + H+DS+G    I PG V  M+AG G+ HSE        Q    
Sbjct: 57  HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116

Query: 113 HFLQIWI-MPDRAGAEPGYQEAHFSAADK-------DGKLRLVA-SADGRDGSVSMNQDA 163
           H LQ+W+ +P  A  E G    H  AAD+         +L ++A SA G    V      
Sbjct: 117 HGLQMWVALP--ADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTASPT 174

Query: 164 QLYAGLFDGAQTAEYTLPPGRLGYVHVARGKISVNGQALEAGDAVKL 210
              AG      T E          V+V RG++S++G+ LEAG    L
Sbjct: 175 LYVAGSTTDGATLEIAAEVQERA-VYVVRGEVSLDGERLEAGTLAIL 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 860,506
Number of extensions: 39242
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)