BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0015.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA synthe...   579   e-167
gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...   125   4e-30

>gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  579 bits (1493), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/294 (98%), Positives = 292/294 (99%)

Query: 1   VSRHAYVGRFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDI 60
           +S HAYVGRFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDI
Sbjct: 1   MSCHAYVGRFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDI 60

Query: 61  IAALAALDMRSDGPVLVQSQRKARYQLARDRLGALAYPCGCSRKEIADSRVGTASDGAAL 120
           IA LAALDMRSDGPVLVQSQRKARYQLARDRLGALAYPCGCSRKEIADSRVGTASDGAAL
Sbjct: 61  IATLAALDMRSDGPVLVQSQRKARYQLARDRLGALAYPCGCSRKEIADSRVGTASDGAAL 120

Query: 121 YPGTCRHGLAPGKEARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADG 180
           YPGTCRHGLAPGK+ARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADG
Sbjct: 121 YPGTCRHGLAPGKQARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADG 180

Query: 181 FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEK 240
           FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEK
Sbjct: 181 FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEK 240

Query: 241 FSKQNGAQALDLNQPLQALQQAAAFLGLDTGAARDREGFWALALTGWQARFGPR 294
           FSKQNGAQALDLNQPLQALQQAAAFLGLDTGAARDREGFWALALTGWQARFGPR
Sbjct: 241 FSKQNGAQALDLNQPLQALQQAAAFLGLDTGAARDREGFWALALTGWQARFGPR 294


>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 132/258 (51%), Gaps = 15/258 (5%)

Query: 9   RFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDIIAALAALD 68
           RFAPSP+G LH G    AL S+  AR   G ++LRIED D  R+   A Q II  +  L 
Sbjct: 25  RFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAIIEGMQWLG 84

Query: 69  MRSDGPVLVQSQRKARYQ--LARDRLGALAYPCGCSRKEIADSRVGTASDG-AALYPGTC 125
           +  D     Q +R  RY+  +A+      AY C C+ +E+   R    + G    Y GT 
Sbjct: 85  LEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYDGTW 144

Query: 126 RHGLAPGK------EARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRAD 179
           R    PGK      E R   +R  +P Q GE V + D   GP       E+ D V+ R D
Sbjct: 145 RP--EPGKTLPAIPEGRKPVVRFKNP-QDGE-VSWNDVVKGPITIS-NRELDDLVIARPD 199

Query: 180 GFWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGE 239
           G   Y   VVVDD +  +T ++RG D +++T RQI +   LG   P Y HVP+++   GE
Sbjct: 200 GTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGADGE 259

Query: 240 KFSKQNGAQALDLNQPLQ 257
           K SK++GA ++ ++ P Q
Sbjct: 260 KLSKRHGAVSV-MDYPAQ 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 918,556
Number of extensions: 36095
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)