BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0011.p (451 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 920 0.0 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 232 4e-62 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 182 3e-47 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 178 7e-46 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/451 (99%), Positives = 447/451 (99%) Query: 1 VLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFF 60 VLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFF Sbjct: 153 VLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFF 212 Query: 61 EAISNRGYVLFKMQRPAEALQAYDRALALDESAPDLWFNRGSTLEQLYRFEEASESYRRA 120 EAISNRGYVLFKMQRPAEALQAYDRALALDE APDLWFNRGSTLEQLYRFEEASESYRRA Sbjct: 213 EAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASESYRRA 272 Query: 121 KALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQPLWLGEQPLEG 180 KALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQPLWLGEQPLEG Sbjct: 273 KALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQPLWLGEQPLEG 332 Query: 181 KTILLHAEQGFGDTLQFVRYAPLLAAHGARVILEVQPALTRQLAGLPGVTQVIGTDHFMR 240 KTILLHAEQGFGDTLQFVRYAPLLAA GARVILEVQPALTRQLAGLPGVTQVIGTDHFMR Sbjct: 333 KTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGLPGVTQVIGTDHFMR 392 Query: 241 PPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLPRNRALRVGLVWAGSS 300 PPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLPRNRALRVGLVWAGSS Sbjct: 393 PPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLPRNRALRVGLVWAGSS 452 Query: 301 AQTHPDAVRIDGERSLPFATLVPLVELAREHAGLEFYSLQVGQDAVAQLHAHPLASLVRD 360 AQTHPDAVRIDGERSLPFATL PLVELAREHA LEFYSLQVGQDAVAQLHAHPLASLVRD Sbjct: 453 AQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVGQDAVAQLHAHPLASLVRD 512 Query: 361 CSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPW 420 CSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPW Sbjct: 513 CSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPW 572 Query: 421 YGGMTIFGQRTAGQWDEVIARVRAALQQQLA 451 YGGMTIFGQRTAGQWDEVIARVRAALQQQLA Sbjct: 573 YGGMTIFGQRTAGQWDEVIARVRAALQQQLA 603 Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 63/117 (53%) Query: 17 RAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRP 76 +A+ L PD ++ +F+ + D+A+ YD L V DF EA+ RG L ++ R Sbjct: 67 KAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRN 126 Query: 77 AEALQAYDRALALDESAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWN 133 EAL +RA AL D WF RG+ L Y + +A ESY RA AL+PD A +N Sbjct: 127 REALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFN 183 Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 62/124 (50%) Query: 10 DARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYV 69 +A Y+ + + DF+EA G + + +AL +RA + PD +A RG V Sbjct: 94 EAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPDNADAWFQRGNV 153 Query: 70 LFKMQRPAEALQAYDRALALDESAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGS 129 L +A ++Y+RA+AL + WFN G+T + + ++A +Y RA ++PD Sbjct: 154 LHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFE 213 Query: 130 ATWN 133 A N Sbjct: 214 AISN 217 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 232 bits (592), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 170/469 (36%), Positives = 237/469 (50%), Gaps = 35/469 (7%) Query: 2 LHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFE 61 H Y +A ES++ A+ L P A + ++ N++D+A R +E+ P Sbjct: 204 FHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPN 263 Query: 62 AISNRGYVLFKMQ-RPAEALQAYDRALALDESAPDLWFNRGSTLEQLYRFEEASESYRRA 120 A G F R +A++ +++AL +D + N G+ E+A ++R+A Sbjct: 264 AYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKA 323 Query: 121 KALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQ-----PLWLGE 175 L+P+ +A N AL L QG GW+ E+R T + R + P W G+ Sbjct: 324 LELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGK 383 Query: 176 QPLEGKTILLHAEQGFGDTLQFVRYAPLLAAHGARVILEVQPALTRQLAGL-PGVTQVIG 234 L GK ILL EQGFGD++QF+RY ++ GARV L V+ L R P VT V Sbjct: 384 SSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRE 443 Query: 235 TDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP--YLLPE---ASSWAAWHQRLPRN-R 288 +D PP D LMSLP A T + DIP P YL + SSW ++L ++ Sbjct: 444 SDPL--PPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQSPE 501 Query: 289 ALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLVPLVELAREHAGLEFYSLQVGQ--DAV 346 LRVG+VW G+ + D RS+ L +L +EFYSLQ G+ DA Sbjct: 502 KLRVGVVWGGNPEHGN------DRHRSIAMDKFATLFQLP----NIEFYSLQKGKPLDAF 551 Query: 347 AQLH-AHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRH 405 L P+ +L DC DFA+T A +ANLDL+++VDTSV HLAGALG P W+L H Sbjct: 552 KALPPGLPIFNLGDDC----QDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPH 607 Query: 406 NGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARV---RAALQQQLA 451 WRW +REDSPWY GM +F Q W+ V+ +V ALQQ+ A Sbjct: 608 VPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKA 656 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 182 bits (463), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 218/441 (49%), Gaps = 25/441 (5%) Query: 16 ERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQR 75 E A+ P + W + Q D A + +AL + + G V + Sbjct: 137 EEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQ 196 Query: 76 PAEALQAYDRALALDESAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEA 135 EAL+ YD+AL L D +RG+TL +L + EEA +SYRRA + A N A Sbjct: 197 FEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLA 256 Query: 136 LMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTL 195 L L G W +E RW R P W G L GK ILL AEQG GDT+ Sbjct: 257 LSLLVLGRLEQAWPLYEWRWEGRSA-DPYRHATIPAWNGGSSLAGKRILLWAEQGQGDTI 315 Query: 196 QFVRYAPLLAAHGARVILEVQPALTRQLAGL--PGVTQVIGTDHFMRPPFDFHCPLMSLP 253 QF RY L+ GA+V+LEV +L + L P ++ + P DF PLMSLP Sbjct: 316 QFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPL-PEVDFQLPLMSLP 374 Query: 254 LACKTFSEADIPRA-PYLLPEASSWAAWHQRL----PRNRA-LRVGLVWAGSSAQTHPDA 307 L C T ++ DIP A PYL + + W +RL PR+ A +R+GLV +G++ + Sbjct: 375 LVCNTRAD-DIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVN--- 430 Query: 308 VRIDGERSLPFATLVPLVELAREHAGLEFYSLQ--VGQDAVAQLHAHPLASLVRDCSPEL 365 D RS+ + PL LAR L+F+ +Q + Q P V + Sbjct: 431 ---DARRSIELSRFAPLA-LARPQ--LDFFVIQPDLRQADRQWCEQQPGWHWV---GAAI 481 Query: 366 HDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMT 425 +DFA+T A+LA +DL+I+VDT+ HLAGA+ PVW+ + WRW + DSPWY Sbjct: 482 NDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTAR 541 Query: 426 IFGQRTAGQWDEVIARVRAAL 446 +F Q+ G WD+VI +RAAL Sbjct: 542 LFRQQQPGAWDDVILTLRAAL 562 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 178 bits (452), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 147/419 (35%), Positives = 198/419 (47%), Gaps = 24/419 (5%) Query: 41 QLDQ---ALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDESAPDLW 97 QLDQ AL A +RAL + +L ++ R EAL+ Y A D++ Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 98 FNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWAT 157 FN L ++ R E+A ++ +A PD A A M L Q + GW+ E R+ Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 158 EQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAAHGARVILEVQP 217 ++ + +P W +P+ GK +LL AEQG GDTLQF RY PL+A A V L Sbjct: 241 AELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 Query: 218 ALTRQLAGLPGVTQV-IGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASS 276 +L LA P + QV + P D H L+SLPL P +PYL + Sbjct: 301 SLLAVLA--PCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQR 358 Query: 277 WAAWHQRLP-----RNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLVPLVELAREH 331 W L R R+G+ WAG T + R +P L PL L Sbjct: 359 VQQWQAYLSALWPAMPRRPRLGIAWAGRQYAT------VHHSRDIPLDALAPLWTLP--- 409 Query: 332 AGLEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHL 391 +F SLQV A Q LA R +P L D+A+T ALL LDL+I+VDT+V HL Sbjct: 410 --ADFVSLQVEVPAGDQAAHATLAQ--RLHTPTLVDWADTAALLCALDLVISVDTAVVHL 465 Query: 392 AGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQL 450 AGALG P L R++G WRW V+ +PWY + + QR GQW V+ + A Q+L Sbjct: 466 AGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRL 524 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,554,724 Number of extensions: 69867 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 9 Length of query: 451 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 363 Effective length of database: 1,203,190 Effective search space: 436757970 Effective search space used: 436757970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)