BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0008.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148...   491   e-140

>gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  491 bits (1265), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/261 (96%), Positives = 255/261 (97%)

Query: 1   LSSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCWAGRIATLGPVAPEVAGWLHD 60
           LSSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCW  RIATLGPVAPEVAGWLHD
Sbjct: 12  LSSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCWECRIATLGPVAPEVAGWLHD 71

Query: 61  LEHDPGLNAALHAHLARQPTARLGRYAEQLLTFYLQQQDWLVVANLQVRQQGPTHETLGE 120
           LEHDPGLNAALHAHLARQPTARLGRYAEQLLTFYLQQQDWLV ANLQVRQQGPTHETLGE
Sbjct: 72  LEHDPGLNAALHAHLARQPTARLGRYAEQLLTFYLQQQDWLVAANLQVRQQGPTHETLGE 131

Query: 121 FDFLVRPPGDDELGLIHWEFATKFYLLAPQSAADAAADAGAFVGPNLADTLGKKMRKIMQ 180
           FDFLVRPPGDDELGLIHWEFATKFYLLAPQSAADA A+AGAFVGPNLADTLGKKMRKIMQ
Sbjct: 132 FDFLVRPPGDDELGLIHWEFATKFYLLAPQSAADAKANAGAFVGPNLADTLGKKMRKIMQ 191

Query: 181 QQLMLSAHPAAASVLPAPVVAARALVKGWLFYRHGETVELPASLGVAADHCRGFWCDLPR 240
           QQLMLSAHPAAASVLPAPVVAARALVKGWLFYRHGE VELPASLGVAADHCRGFWCDLPR
Sbjct: 192 QQLMLSAHPAAASVLPAPVVAARALVKGWLFYRHGEAVELPASLGVAADHCRGFWCDLPR 251

Query: 241 LAAQHQPEDLYLILPRLAWGA 261
           LAAQHQP+DLYLILPRLAW A
Sbjct: 252 LAAQHQPDDLYLILPRLAWLA 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,005,848
Number of extensions: 41917
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)