BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0003.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...   321   2e-89
gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...    59   2e-10

>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  321 bits (822), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MTIGTYDPDFNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60
           MTIGTYDPDFNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE
Sbjct: 1   MTIGTYDPDFNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60

Query: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLTT 120
           IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLTT
Sbjct: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLTT 120

Query: 121 ENDEQAEVRMAEKGADAARVAVEMANLAIVLEELGQVTEEE 161
           ENDEQAEVRMAEKGADAARVAVEMANLAIVLEELGQVTEEE
Sbjct: 121 ENDEQAEVRMAEKGADAARVAVEMANLAIVLEELGQVTEEE 161


>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%)

Query: 16  RIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQKMAETEQFD 75
           RI  +QA +++D+      A   E+  LG     I    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIPLHAKVLAKTGRYA 75

Query: 76  ALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLT 119
            ++A G V+ G  Y  + V+    + + ++ LD  VP+ +AVLT
Sbjct: 76  GIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLT 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 489,080
Number of extensions: 19768
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)