BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0371.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311657|ref|YP_003775749.1| clavaminic acid synthetase (CAS...   701   0.0  
gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetas...   229   2e-61

>gi|300311657|ref|YP_003775749.1| clavaminic acid synthetase
           (CAS)-like protein [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/342 (99%), Positives = 340/342 (99%)

Query: 1   MPTDIASALHPQATAFPADLKTPWRSKAPPASALPALLQADGPGQPLQQAFEHQRDWIDA 60
           MPTDIASALHPQATAFPADL TPWRSKAPPASALPALLQADGPGQPLQQAFEHQRDWIDA
Sbjct: 1   MPTDIASALHPQATAFPADLTTPWRSKAPPASALPALLQADGPGQPLQQAFEHQRDWIDA 60

Query: 61  TVQQVGGVLLRGYAVPEVAVFRAFAAAFGHALLSYEFASTPRSNVSSGVYTSTEYPAHQH 120
           TVQQVGGVLLRGYAVPEVAVFRAFAAAFGHALLSYEFASTPRSNVSSGVYTSTEYPAHQH
Sbjct: 61  TVQQVGGVLLRGYAVPEVAVFRAFAAAFGHALLSYEFASTPRSNVSSGVYTSTEYPAHQH 120

Query: 121 IPLHNEQAYTREWPMKIWFHCVTAAQAGGETPIADSRAIYRRMPAAIRERFAAGLVYVRN 180
           IPLHNEQAYTREWPMKIWFHCVTAAQAGGETPIADSRAIYRRMPAAIRERFAAGLVYVRN
Sbjct: 121 IPLHNEQAYTREWPMKIWFHCVTAAQAGGETPIADSRAIYRRMPAAIRERFAAGLVYVRN 180

Query: 181 YDSDFDVPWQQVFNTDDRAQVEAFCRRAGVQWEWKADGSMRTIQRCQGVERHPCSGEMVW 240
           YDSDFDVPWQQVFNTDDRAQVEAFCRRAGVQWEWKADGSMRTIQRCQGVERHP SGEMVW
Sbjct: 181 YDSDFDVPWQQVFNTDDRAQVEAFCRRAGVQWEWKADGSMRTIQRCQGVERHPRSGEMVW 240

Query: 241 FNQAHLFHPSNLQADVRESLEDMLGVDNLPRNVLFADGSPIPDSMLEEVRAVLDQETVIF 300
           FNQAHLFHPSNLQADVRESLEDMLGVDNLPRNVLFADGSPIPDSMLEEVRAVLDQETVIF
Sbjct: 241 FNQAHLFHPSNLQADVRESLEDMLGVDNLPRNVLFADGSPIPDSMLEEVRAVLDQETVIF 300

Query: 301 PWEAGDVLMLDNMLAAHARTPFEGPRKVVVAMAEPHGNLHQG 342
           PWEAGDVLMLDNMLAAHARTPFEGPRKVVVAMAEPHGNLHQG
Sbjct: 301 PWEAGDVLMLDNMLAAHARTPFEGPRKVVVAMAEPHGNLHQG 342


>gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetase
            [Herbaspirillum seropedicae SmR1]
          Length = 9160

 Score =  229 bits (584), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 34   LPALLQADGPGQPLQQAFEHQRDWIDATVQQVGGVLLRGYAVPEVAVFRAFAAAFGHALL 93
             P +++    G  + +    +R +I   + + GGVL R + +   A F +FA A    L 
Sbjct: 3779 FPLVIEPAAAGLDMAEWARRERGYIADMLCKHGGVLFRNFGLRTPADFESFAEAIEPELY 3838

Query: 94   SYEFASTPRSNVSSGVYTSTEYPAHQHIPLHNEQAYTREWPMKIWFHCVTAAQAGGETPI 153
               +   P++      Y ST YP  + I  HNE A+   WP K WF C   +  GG TPI
Sbjct: 3839 G-GYGDLPKNEGGKNTYRSTPYPEKEMILFHNESAHMERWPRKQWFFCELPSPVGGATPI 3897

Query: 154  ADSRAIYRRMPAAIRERFAAG-LVYVRNYDSDFDVPWQQVFNTDDRAQVEAFCRRAGVQW 212
             D R +YRR+PA + +RF    L+Y+R +    DV W+  F TDDR  VEA  + AG Q+
Sbjct: 3898 VDCREVYRRLPAELAQRFEQKQLLYIRTFTERLDVSWRDFFKTDDRRAVEARLQAAGTQY 3957

Query: 213  EWKADGSMRTIQRCQGVERHPCSGEMVWFNQAHLFHPSNLQADVRESLEDMLGVDNLPRN 272
             W A   ++T   C  V  HP +GE V+FNQ  L H + L   VR  L  M+G++ +PR+
Sbjct: 3958 RWLAGDELQTRTLCPAVITHPQTGEKVFFNQVQLHHIACLDPSVRRDLLAMVGMERMPRH 4017

Query: 273  VLFADGSPIPDSMLEEVRAVLDQETVIFPWEAGDVLMLDNMLAAHARTPFEGPRKVVVAM 332
            V + DGS I +  +  V  + +Q  V F W+ GDV+MLDNM+AAHAR P+EGPRK+VVAM
Sbjct: 4018 VTYGDGSEIDEQTMALVGQLYEQCAVRFTWQQGDVVMLDNMIAAHARDPYEGPRKIVVAM 4077

Query: 333  A 333
             
Sbjct: 4078 G 4078


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,062,760
Number of extensions: 41653
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)