BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0360.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 630 0.0 gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A... 91 2e-19 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 80 2e-16 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 75 7e-15 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 71 1e-13 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 630 bits (1624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/336 (97%), Positives = 329/336 (97%), Gaps = 1/336 (0%) Query: 1 MNITRRVFNTAIAALLLAAATNASAADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF 60 MNITRRVFNTA A LL A A+AADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF Sbjct: 1 MNITRRVFNTA-IAALLLAGAGANAADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF 59 Query: 61 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGAG 120 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGAG Sbjct: 60 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGAG 119 Query: 121 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDIDGG 180 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDIDGG Sbjct: 120 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDIDGG 179 Query: 181 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFLKTFSAVIDKASL 240 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFLKTFSAVIDKASL Sbjct: 180 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFLKTFSAVIDKASL 239 Query: 241 SFQNDKAAWNKDSENARLLAKLLGGTPADQAAGLQNLNLVPVAAQASPTWLGGGENSGIA 300 SFQNDKAAWNKDSENARLLAKLLGGTPADQAAGLQNLNLVPVAAQASPTWLGGGENSGIA Sbjct: 240 SFQNDKAAWNKDSENARLLAKLLGGTPADQAAGLQNLNLVPVAAQASPTWLGGGENSGIA 299 Query: 301 RILKETAVFLKEQKKISDVLPSYAAFVTPTAVAGLK 336 RILKETAVFLKEQKKISDVLPSYAAFVTPTAVAGLK Sbjct: 300 RILKETAVFLKEQKKISDVLPSYAAFVTPTAVAGLK 335 >gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 19/237 (8%) Query: 5 RRVFNTAIAALL---LAAATNASAADKPIVVGYQSDALPSSLAIANGEFEK---ATGKKI 58 RR+ + A A L LA A+ + +K I +GYQ + ++ ANG EK TG KI Sbjct: 11 RRLLHAATALGLGSALAPASVFAQGNKAIRIGYQKSSTLLTILKANGTLEKLLAPTGAKI 70 Query: 59 DFRKFNSGADVIAA--IAGGDVQVGYVGSSPLAAAASRGLDVKAFYLA--SISGTDEALV 114 + +F SG ++ A + G D+ + P+ A A+ K Y+A S S +A+V Sbjct: 71 SWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAA---GAKLAYVAQESPSPAAQAIV 127 Query: 115 VRNGAGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNR 174 VR + + +DLKGKK+A + HY L+A ++ G DV + D AA+ R Sbjct: 128 VRADSVLRKASDLKGKKIAVTKAAGVHYLLIATLEKAGLKFSDVDAAYLSPADGRAAFER 187 Query: 175 GDIDGGFVWDPALTELKKNGKVLVTS--KDVADKGAPTFSAWIATGSFAKEHPEFLK 229 G +D WDP L +++ +V + S + VAD ++A+ SFA+ PE L+ Sbjct: 188 GSVDAWVTWDPFLAGVQRQSQVRILSDGRGVADYQ----RYYLASASFAQARPEVLR 240 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%) Query: 5 RRVFNTAIAALLLAAATNASAAD--KPIVVGYQSDALPSSLAIANGEFEK---ATGKKID 59 +R+ A+ AL +A + A K + +GYQ A L A+G EK G ++ Sbjct: 18 QRLSAIALGALTIALGASPVQAQETKLLRIGYQKAANTLVLLKAHGTLEKRLQPLGVEVK 77 Query: 60 FRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTD-EALVVRNG 118 + +F +G ++ A+ G V GYVG +P A + G D + I D E L+V+ Sbjct: 78 WAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADF-VYTAYEIPTPDAEGLLVQKN 136 Query: 119 AGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDID 178 + I SVA+LKGKK+A S H+ ++AL+K G D++ + D AA+ RG +D Sbjct: 137 SPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGAVD 196 Query: 179 GGFVWDP 185 +WDP Sbjct: 197 AWAIWDP 203 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 23/292 (7%) Query: 5 RRVFNTAIAALLLAAATN--ASAADKPIVVGYQSDALPSSLAIANGEFEKA---TGKKID 59 RR+ +AA LA+ T +AADK + +GYQ + L +G+ E+A G + Sbjct: 10 RRLLLQGLAAGALASGTPLVRAAADKVLRIGYQKFNTLNILK-GSGKLEQALQPQGWSVK 68 Query: 60 FRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEAL--VVRN 117 + +F +G + A+ + +G+ +P A + G V A YL + + + V Sbjct: 69 WFEFAAGPQLTEALNANAIDLGHAADTPSVFANASG--VNAVYLGAEQPYPKGIGIFVAQ 126 Query: 118 GAGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVK-VFAIPQPDIVAAYNRGD 176 + I SVADLKGKK+A + LL ++ G + +D++ V+ D+ AA+ G+ Sbjct: 127 ESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSGN 186 Query: 177 IDGGFVWDPAL--TELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFLKTFSAV 234 +D +WDP L EL ++L +++ TF +A SF H + ++T A Sbjct: 187 VDAATLWDPFLAGQELATRPRILRDGTGLSNNR--TFH--LAVPSFVDRHKDIVRTVFAE 242 Query: 235 IDKASLSFQNDKAAWNKDSENARLLAKLLGGTPADQAAGLQNLNLVPVAAQA 286 + K + Q+ E A LLA LG P + N VA A Sbjct: 243 LKKTNQWTQSHP------QETAELLAPQLGVDPKVLRLATERRNYTTVAVDA 288 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 11/211 (5%) Query: 24 SAADKPIVVGYQSDALPSSLAIANGEFEK---ATGKKIDFRKFNSGADVIAAIAGGDVQV 80 +AA + + VGYQ AL SL A+G E+ G + + +F++G + A+ G + Sbjct: 47 AAAPRQLRVGYQKGAL--SLIRAHGVLEQRLAPLGATVKWVEFSAGPVQLEALGAGSIDF 104 Query: 81 GYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGAGINSVADLKGKKLAAAPVSTD 140 G VG +P A + G + EA++V++ + + LKGK++A S Sbjct: 105 GDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNKGSNV 164 Query: 141 HYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDIDGGFVWDPALTELKK--NGKVLV 198 HY L+ L++ G DV + D AA+ RG +D +W+P L ++ ++L Sbjct: 165 HYFLVKLLEKHGLKYGDVTPVWLAPADARAAFERGAVDAWAIWEPYLAAAQQGLKARILA 224 Query: 199 TSKDVADKGAPTFSAWIATGSFAKEHPEFLK 229 + V A FS T +A++H + L+ Sbjct: 225 DADGVVKNRAYYFS----TRDYARDHADLLR 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,016,813 Number of extensions: 42654 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 8 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)