BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0359.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 520 e-149 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 219 2e-58 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 196 1e-51 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 188 4e-49 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 182 2e-47 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 520 bits (1338), Expect = e-149, Method: Compositional matrix adjust. Identities = 258/261 (98%), Positives = 259/261 (99%) Query: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 61 GRISLDGQPVSEPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRL 120 GRISLDGQPVS PGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRL Sbjct: 61 GRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRL 120 Query: 121 VGLQDFARAAPYELSGGMRQRVGLARALATDPKILLMDEPFGALDSMTREQMQELLVSVW 180 VGLQDFARAAPYELSGGMRQRVGLARALA +PKILLMDEPFGALDSMTREQMQELLVSVW Sbjct: 121 VGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVW 180 Query: 181 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPA 240 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPA Sbjct: 181 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPA 240 Query: 241 FAELREEIRAIVHQSEDLVTS 261 FAELREEIRAIVHQSEDLVTS Sbjct: 241 FAELREEIRAIVHQSEDLVTS 261 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 219 bits (558), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 163/256 (63%), Gaps = 4/256 (1%) Query: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 ++++ F D++ V AL ++LDIP+G FV LG SGCGKSTLLNA+AGF S G Sbjct: 10 IRIQGVHKVFKTDDREVV-ALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 62 RISLDGQPVSEPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 +I D + VSEPG +RG+VFQ+ +L PW +V+ NVA GL+ G K++ +R +LL + Sbjct: 69 QILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKL 128 Query: 122 GLQDFARAAPYELSGGMRQRVGLARALATDPKILLMDEPFGALDSMTREQMQELLVSVWA 181 GL DF P +LSGGMRQRV +AR LA D I+LMDEPFGALD++TR +Q+ L+ +W Sbjct: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 Query: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVR-RFAAGCEARAIKTEPA 240 K + F+THSIEEA++L ++VM+ RPG + + R R A E A+K E Sbjct: 189 EFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKRELG 248 Query: 241 FAELREEIRAIVHQSE 256 + E+ R H +E Sbjct: 249 QLVMEEQQRH--HNAE 262 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 +L+V+ S+ + V A VS D+ V LG SGCGKS+LL ++AGFLP + Sbjct: 20 LLQVDRVSLQYRSATAV-VQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 Query: 61 GRISLDGQPVSEPGAERGVVFQK-DSLLPWKSVQDNVALGLKFA-GVSKSDSRERAQELL 118 G I LDGQ + +PG +R VVFQ+ D L PWK+V NV L + + K D+ ERA+ L Sbjct: 79 GEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYL 138 Query: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALATDPKILLMDEPFGALDSMTREQMQELLVS 178 VGL FA A P+ LSGGM+ RV +ARALA PK+LLMDEPF ALD++TR +MQE L++ Sbjct: 139 DKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 Query: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 +W + F+THSIEEAL +G ++++SP PGR+ A + Sbjct: 199 LWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 188 bits (477), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 +L+++ ++ + D V A VS ++ G + LG SGCGKSTLL A+ G+L + Sbjct: 17 LLEIDRVTLQYKTTDS-LVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 Query: 61 GRISLDGQPVSEPGAERGVVFQK-DSLLPWKSVQDNVALGLKFAG-VSKSDSRERAQELL 118 G I L G+ V EPG +R +VFQ+ D LLPWK+V+ NV L +G + + ERA+ + Sbjct: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEYYI 135 Query: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALATDPKILLMDEPFGALDSMTREQMQELLVS 178 VGL F + P+ LSGGM+QRV +AR +A +P +LLMDEPF ALD++TR +MQ+ L+ Sbjct: 136 SKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 Query: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 +W T V F+THSIEEA+ +GT +++++P PG++ A + Sbjct: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS 237 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 123/206 (59%), Gaps = 3/206 (1%) Query: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDG---QPVSEPGA 75 HALD V LDI G FV LG SGCGKSTLL AG S G I G V P Sbjct: 33 THALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPER 92 Query: 76 ERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELS 135 +VFQ+ +L+PW +V+ NV L L V ++ + R L+ VGL+ F P ELS Sbjct: 93 TLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVGLESFHAVLPRELS 152 Query: 136 GGMRQRVGLARALATDPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIE 195 GGM+ R +ARALAT P +LLMDEPFGALD TR ++ L +W+R V F+THSI Sbjct: 153 GGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQDLTVVFVTHSIY 212 Query: 196 EALFLGTEVIVMSPRPGRIVARFETD 221 EA+FL + VIVM+ RPGR++A D Sbjct: 213 EAVFLSSRVIVMAARPGRVIADVAID 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 802,208 Number of extensions: 34044 Number of successful extensions: 520 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 142 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)