BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0358.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 543 e-156 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 141 5e-35 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 137 1e-33 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 120 1e-28 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 112 5e-26 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 543 bits (1398), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/293 (99%), Positives = 292/293 (99%), Gaps = 1/293 (0%) Query: 1 MNDQVQPLPLLNALRPDPSAQAQADQPP-LVKMRSFGIAEGSTARISIAAGIVILALWWL 59 MNDQVQPLPLLNALRPDPSAQAQADQPP LVKMRSFGIAEGSTARISIAAGIVILALWWL Sbjct: 1 MNDQVQPLPLLNALRPDPSAQAQADQPPPLVKMRSFGIAEGSTARISIAAGIVILALWWL 60 Query: 60 IAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPV 119 IAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPV Sbjct: 61 IAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPV 120 Query: 120 GLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSA 179 GLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSA Sbjct: 121 GLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSA 180 Query: 180 QAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIA 239 QAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIA Sbjct: 181 QAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIA 240 Query: 240 SNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWKGKS 292 SNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWKGKS Sbjct: 241 SNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWKGKS 293 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 141 bits (356), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 6/242 (2%) Query: 45 ISIAAGIVILALWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLR 104 IS+ A + L LW L++ T LFLP+ + A + DG TL + V AS R Sbjct: 17 ISVIAIVGGLVLWQLVSLT--TSPLFLPSVSMTWAAALELISDG----TLQQSVLASSGR 70 Query: 105 ILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKI 164 IL V++G+P+G+ MG V+ +LD IEF+ +PP+A++ L +IWLG GE SKI Sbjct: 71 ILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKI 130 Query: 165 TLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIA 224 L+ V L+ AGV+++ R+ AA SLGA +W++L+ V+LPS +P ++TG RIA Sbjct: 131 ALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIA 190 Query: 225 LGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERA 284 +G + T+V+AE++++ G+G +I +A +F T+ VFVGI + + F +R+ R Sbjct: 191 MGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRK 250 Query: 285 LV 286 L+ Sbjct: 251 LL 252 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 132/235 (56%), Gaps = 5/235 (2%) Query: 56 LWWLIA-QTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVL 114 +WW +A Q GW+ LP P VLK A WE A+ L H+ S R + + Sbjct: 45 VWWEVAAQAGWLSSRILPEPLAVLKAA---WELS-ASGELWRHLAVSSGRAASGFAVGAG 100 Query: 115 LGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAP 174 LG+ +GLL G R + +LDT ++ +P LA +PL+I+W GI E +K+ L+++ +F P Sbjct: 101 LGLILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFP 160 Query: 175 VVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVA 234 V L+ G+RS+ Q + A S G + W L +V+LP ALP IL G+R ALG+ W L+ Sbjct: 161 VYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIV 220 Query: 235 AELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWK 289 AE I++ GIGYM M+A FL TD V VGI L A R LER + W Sbjct: 221 AETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRWH 275 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 141/253 (55%), Gaps = 15/253 (5%) Query: 51 IVILALWWLIAQTGWVPHLFLPTPAEVLKV--------------AQSIWEDGYANATLAE 96 I+++ALW ++ GW+ LP+P VL+ A S ++ + + Sbjct: 17 IIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSGELVMD 76 Query: 97 HVGASLLRILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWL 156 +G SL R++ +I L +P+GLLMG ++ + G+++ ++ P+PP+AY+PL I+W Sbjct: 77 AIG-SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 Query: 157 GIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPE 216 G+G + L++L F PV+++ AGVR + + AA +LGA++ L V+LP+A+P Sbjct: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 Query: 217 ILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSY 276 IL+G+RI +G + ++ AE+IA + G+G+ IM A + +D + G+ I A Sbjct: 196 ILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDL 255 Query: 277 GMRLLERALVPWK 289 GM L ++ W Sbjct: 256 GMSRLNNYMLRWH 268 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Query: 66 VPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGL 125 +P LP P+E+ S+ + G L H+ ASL R+ VI L + +GLL+G+ Sbjct: 48 IPARLLPPPSELAHTLWSLAQRG----ELLPHIAASLARVAAGFVIGSALAVALGLLVGI 103 Query: 126 NRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRS 185 +R + +L+ + +P LA++PL+++WLGI E K+ L+ + F PV L+ AG+R Sbjct: 104 SRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRD 163 Query: 186 LPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIG 245 + + + + G L+ ++LP++LP + G+R L + W LVAAELIA+ +G+G Sbjct: 164 IDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVG 223 Query: 246 YMI 248 Y++ Sbjct: 224 YLL 226 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 945,981 Number of extensions: 40174 Number of successful extensions: 270 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 19 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)