BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0356.p (771 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching prot... 1558 0.0 gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching prot... 973 0.0 gi|300311816|ref|YP_003775908.1| malto-oligosyltrehalose trehalo... 95 3e-20 >gi|300311642|ref|YP_003775734.1| 1,4-alpha-glucan branching protein [Herbaspirillum seropedicae SmR1] Length = 819 Score = 1558 bits (4033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 761/779 (97%), Positives = 763/779 (97%), Gaps = 8/779 (1%) Query: 1 LATRLMQGRLGDPFALLGPREIADAPETTQKAK--RLRLCCYFPGASAVQVYARTSAAPD 58 L RLMQGRLGDPFALLGPREIADAPE TQKAK RLRLCCYFPGASAVQVYARTSAAPD Sbjct: 41 LVARLMQGRLGDPFALLGPREIADAPEATQKAKAKRLRLCCYFPGASAVQVYARTSAAPD 100 Query: 59 ------APGSLLGSLHEWSPATGQGESDHNQEAPRQRSGVFVGEVKLPRRAVLPPIPYVF 112 + GSLLGSLHEWSPATGQGESDH+QEAPRQRSGVF GEVKLPRRAV PPIPYVF Sbjct: 101 ELHAPDSTGSLLGSLHEWSPATGQGESDHDQEAPRQRSGVFFGEVKLPRRAVQPPIPYVF 160 Query: 113 HVTWRGADGRETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGVEGVR 172 HVTWRGADGRETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGVEGVR Sbjct: 161 HVTWRGADGRETLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGVEGVR 220 Query: 173 FAVWAPNAQRVSVIGDFNQWDGRRNPMRLRQSAGVWELFVPRLGDGALYKYEIIGPHGEL 232 FAVWAPNAQRVSVIGDFNQWDGRRNPMRLRQSAGVWELFVPRLGDGALYKYEIIGPHGEL Sbjct: 221 FAVWAPNAQRVSVIGDFNQWDGRRNPMRLRQSAGVWELFVPRLGDGALYKYEIIGPHGEL 280 Query: 233 LPGKADPMARATEVPPATASRVIDDSKLVSGRRWQDAHWLQQRAQGQTRQAPMSIYEVHA 292 LPGKADPMARATEVPPATASRVIDDSKLVSGRRWQDAHWLQQRAQGQTRQAPMSIYEVHA Sbjct: 281 LPGKADPMARATEVPPATASRVIDDSKLVSGRRWQDAHWLQQRAQGQTRQAPMSIYEVHA 340 Query: 293 ASWLRLPGEGNRNLDWNELADRLIPYVKGMGFTHVELLPVMEHPFGGSWGYQPLSQFAPS 352 ASWLRLPGEGNRNLDWNELADRLIPYVKGMGFTHVELLPVMEHPFGGSWGYQPLSQFAPS Sbjct: 341 ASWLRLPGEGNRNLDWNELADRLIPYVKGMGFTHVELLPVMEHPFGGSWGYQPLSQFAPS 400 Query: 353 ARFGPPAEFATFVDACHRAGIGVLLDWVPAHFPSDPHGLAYFDGTPLYEHGDPREGIHQD 412 ARFGPPAEFATFVDACHRAGIGVLLDWVPAHFPSDPHGLAYFDGTPLYEHGDPREGIHQD Sbjct: 401 ARFGPPAEFATFVDACHRAGIGVLLDWVPAHFPSDPHGLAYFDGTPLYEHGDPREGIHQD 460 Query: 413 WNTHIYNLGRHEVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRSSGQWVPNIHGG 472 WNTHIYNLGRHEVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRSSGQWVPNIHGG Sbjct: 461 WNTHIYNLGRHEVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRSSGQWVPNIHGG 520 Query: 473 RENLEAVDFLRELNQTVAERCPGALMIAEESTAWPGVTAPVSEGGLGFTYKWNMGWMHDT 532 RENLEAVDFLRELNQTVAERCPGALMIAEESTAWPGVTAPVSEGGLGFTYKWNMGWMHDT Sbjct: 521 RENLEAVDFLRELNQTVAERCPGALMIAEESTAWPGVTAPVSEGGLGFTYKWNMGWMHDT 580 Query: 533 LRYVELDSIYRRYHHHDITFGMIYAFSESFVLPISHDEVVHGKGTLLQKMAGDAWQRFAN 592 LRYVELDSIYRRYHHHDITFGMIYAFSESFVLPISHDEVVHGKGTLLQKMAGDAWQRFAN Sbjct: 581 LRYVELDSIYRRYHHHDITFGMIYAFSESFVLPISHDEVVHGKGTLLQKMAGDAWQRFAN 640 Query: 593 LRAYLGFMWTHPGKKLLFMGCEFAENREFDPDRSPHWDLLDDARHRGVQRLVRDLNRLYA 652 LRAYLGFMWTHPGKKLLFMGCEFAE REFDPDRSPHWDLLDDA HRGVQRLVRDLNRLYA Sbjct: 641 LRAYLGFMWTHPGKKLLFMGCEFAETREFDPDRSPHWDLLDDAHHRGVQRLVRDLNRLYA 700 Query: 653 GTPALYRHDTEAKGFSWVVGNDELNSVFAYLRQTDDEAPVLVVINMTPVPRHHYRIGVPP 712 GTPALYRHDTEAKGFSWVVGNDELNSVFAYLRQTDDEAPVLVVINMTPVPRHHYRIGVPP Sbjct: 701 GTPALYRHDTEAKGFSWVVGNDELNSVFAYLRQTDDEAPVLVVINMTPVPRHHYRIGVPP 760 Query: 713 GQTQQDRWEEILNTDADCYGGSHLGNGGQLRAQAQACHGHASSLVLTLPPLSTLVLRRG 771 GQTQQDRWEEILNTDADCYGGSHLGNGGQLRAQAQACHGHASSLVLTLPPLSTLVLRRG Sbjct: 761 GQTQQDRWEEILNTDADCYGGSHLGNGGQLRAQAQACHGHASSLVLTLPPLSTLVLRRG 819 >gi|300311818|ref|YP_003775910.1| 1,4-alpha-glucan branching protein [Herbaspirillum seropedicae SmR1] Length = 804 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/779 (65%), Positives = 587/779 (75%), Gaps = 46/779 (5%) Query: 5 LMQGRLGDPFALLGPREIADAPETTQKAKRLRLCCYFPGASAVQVYARTSAAPDAPGSLL 64 L+ GRL PF LLGPR + K + C+ PGA AV+V R S G LL Sbjct: 57 LLAGRLTQPFDLLGPRY------ASAKGDGAAVRCFHPGAEAVRVRCRHS------GVLL 104 Query: 65 GSLHEWSPATGQGESDHNQEAPRQRSGVFVGEVK-LPRRAVLPPIPYVFHVTWRGADGRE 123 L ++ P GQ SG F G V L +R +PYV V WR DG Sbjct: 105 AELQQY-PVDGQP------------SGFFSGLVPGLEQRR--HEVPYVLEVDWRIPDGSR 149 Query: 124 TLQITEDAYAFGLLLSDFDLHLFREGRHRQLARCLGSQVMQIDGVEGVRFAVWAPNAQRV 183 ++Q TED YAFGLLL + DLHL +EGRHRQLA CLG++ M+IDGV G RFAVWAPNA+RV Sbjct: 150 SVQSTEDPYAFGLLLGELDLHLLQEGRHRQLADCLGARPMEIDGVPGTRFAVWAPNAERV 209 Query: 184 SVIGDFNQWDGRRNPMRLRQSAGVWELFVPRLGDGALYKYEIIGPHGELLPGKADPMARA 243 SV+GDFNQWDGRR+ MRLR GVWELF+PR+G G +YKYEI G G LLP KADP+ARA Sbjct: 210 SVVGDFNQWDGRRHVMRLRHEPGVWELFIPRIGPGDVYKYEIRGRGGVLLPLKADPVARA 269 Query: 244 TEVPPATASRVIDDSKLVSGRRWQDAHWLQQRAQGQTRQAPMSIYEVHAASWLRLPGEGN 303 TE PPATAS V D V WQD W+ +RAQ Q+ APMSIYEVH ASW R+P + + Sbjct: 270 TEPPPATASVVADARPYV----WQDQQWMAERAQRQSLSAPMSIYEVHPASWRRVPEQDH 325 Query: 304 RNLDWNELADRLIPYVKGMGFTHVELLPVMEHPFGGSWGYQPLSQFAPSARFGPPAEFAT 363 RNL+W+ELAD+LIPYV GMGFTH+EL+PVMEHPFGGSWGYQP+S FAPSARFG P FA Sbjct: 326 RNLNWDELADQLIPYVVGMGFTHIELMPVMEHPFGGSWGYQPISMFAPSARFGKPERFAA 385 Query: 364 FVDACHRAGIGVLLDWVPAHFPSDPHGLAYFDGTPLYEHGDPREGIHQDWNTHIYNLGRH 423 FVD CH+AGIGVLLDWVPAHFPSD HGLA FDGT LYEH DPREG HQDWNT I+NLGR+ Sbjct: 386 FVDRCHQAGIGVLLDWVPAHFPSDQHGLAQFDGTALYEHADPREGFHQDWNTLIFNLGRN 445 Query: 424 EVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRSSGQWVPNIHGGRENLEAVDFLR 483 EVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSR G+WVPNIHGGRENLEAV FLR Sbjct: 446 EVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRKEGEWVPNIHGGRENLEAVAFLR 505 Query: 484 ELNQTVAERCPGALMIAEESTAWPGVTAPVSEG----GLGFTYKWNMGWMHDTLRYVELD 539 ELN VA+RCPGALMIAEEST+WPGVTAPV E GLGF+YKWNMGWM+DTLRY++ D Sbjct: 506 ELNTVVAQRCPGALMIAEESTSWPGVTAPVKEEGDHHGLGFSYKWNMGWMNDTLRYMQHD 565 Query: 540 SIYRRYHHHDITFGMIYAFSESFVLPISHDEVVHGKGTLLQKMAGDAWQRFANLRAYLGF 599 ++RRYHHHD+TFG++Y FSE+F+LPISHDEVVHGK LL KM GD W+RFAN+RAY GF Sbjct: 566 PLFRRYHHHDMTFGLLYGFSENFILPISHDEVVHGKRALLNKMPGDQWRRFANVRAYFGF 625 Query: 600 MWTHPGKKLLFMGCEFAENREFDPDRSPHWDLLDD-----ARHRGVQRLVRDLNRLYAGT 654 MWTHPGKKLLFMG EF + EFD D+SP+W LLD+ A HR +++LV DLNRLY Sbjct: 626 MWTHPGKKLLFMGSEFGQPDEFDHDKSPYWHLLDEHAGHPAEHRQLRQLVGDLNRLYCSE 685 Query: 655 PALYRHDTEAKGFSWVVGNDELNSVFAYLRQTDDEAPVLVVINMTPVPRHHYRIGVP--- 711 PAL++ D A GF+W VG+D +NSV AY R D+ PVLVV+N+TPVPR +YRIGVP Sbjct: 686 PALHQRDCRADGFAWAVGDDSVNSVLAYFRYADEGPPVLVVVNLTPVPRVNYRIGVPSIA 745 Query: 712 PGQTQQDRWEEILNTDADCYGGSHLGNGGQLRAQAQACHGHASSLVLTLPPLSTLVLRR 770 PG W E+LNTDA YGGS+ GN G ++ Q A HGHA+S+ LTLPPLSTL+LRR Sbjct: 746 PG--HHGVWREVLNTDAGLYGGSNNGNLGAVQVQELAWHGHAASIELTLPPLSTLILRR 802 >gi|300311816|ref|YP_003775908.1| malto-oligosyltrehalose trehalohydrolase [Herbaspirillum seropedicae SmR1] Length = 616 Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 128/314 (40%), Gaps = 45/314 (14%) Query: 171 VRFAVWAPNAQRVSVIGDFNQWDGR-RNPMRLRQSAGVWELFVPRLGDGALYKYEI-IGP 228 VRF VWAP A+ V+V GR R PM W GA Y+Y Sbjct: 21 VRFRVWAPGARSVAV-----DITGRGRLPMDAEPQG--WFALETACDPGATYRYVFDTIS 73 Query: 229 HGELLPGKADPMARATEVPPATASRVIDDSKLVSGRRWQDAHWLQQRAQGQTRQAPMSIY 288 GEL+ DP +R S V+D V WQ W + R +T +Y Sbjct: 74 QGELV--APDPASRGQAGDVFDPSLVVDAQAYV----WQYPQW-RGRPWEET-----VLY 121 Query: 289 EVHAASWLRLPGEGNRNLDWNELADRLIPYVKGMGFTHVELLPVMEHPFGGSWGYQPLSQ 348 E+H + G R + EL G T +EL+PV E P +WGY + Sbjct: 122 ELHPGAMGGFAGIRQRLAELAEL-----------GITAIELMPVAEFPGAHNWGYDGVLP 170 Query: 349 FAPSARFGPPAEFATFVDACHRAGIGVLLDWVPAHFPSDPHGLAYFDGTPLYEHGDPREG 408 FAP A +G P + +D H G+ V LD V HF D + Y H E Sbjct: 171 FAPDASYGTPEQLKALIDTAHGLGMMVFLDVVYNHFGPDGN----------YLHAYAPEF 220 Query: 409 IHQDWNT---HIYNLGRHEVRGFLIASALEWLEHFHVDGLRVDAVASMLYRDYSRSSGQW 465 QD T + R EV F +AL WL+ + DGLR+DAV ++ + GQ Sbjct: 221 FRQDMQTLWGATIDFRRPEVDDFFTQNALYWLQEYRFDGLRLDAVHAICEPAWLERLGQR 280 Query: 466 VPNIHGGRENLEAV 479 + GG+ ++ V Sbjct: 281 IRTEIGGQRHVHLV 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,855,169 Number of extensions: 136824 Number of successful extensions: 336 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 4 Length of query: 771 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 678 Effective length of database: 1,179,515 Effective search space: 799711170 Effective search space used: 799711170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)