BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0355.p (1167 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311641|ref|YP_003775733.1| trehalose synthase [Herbaspiril... 2366 0.0 >gi|300311641|ref|YP_003775733.1| trehalose synthase [Herbaspirillum seropedicae SmR1] Length = 1168 Score = 2366 bits (6131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1163/1168 (99%), Positives = 1166/1168 (99%), Gaps = 1/1168 (0%) Query: 1 MENIQESGAAYQGDPLAQQPGSSNAYARNAKSGNRKRPRQAKQSRPGMQFTRDPLWYKDA 60 MENIQESGAAYQGDPLAQQPGSSNAYARNAKSGNRKRPRQAKQSRPGMQFTRDPLWYKDA Sbjct: 1 MENIQESGAAYQGDPLAQQPGSSNAYARNAKSGNRKRPRQAKQSRPGMQFTRDPLWYKDA 60 Query: 61 VIYQIHVKSYFDANDDGIGDFAGLIQKLDYITGLGVNTIWLLPFYPSPRRDDGYDISEYK 120 VIYQIHVKSYFDANDDGIGDFAGLIQKLDYITGLGVNTIWLLPFYPSPRRDDGYDISEYK Sbjct: 61 VIYQIHVKSYFDANDDGIGDFAGLIQKLDYITGLGVNTIWLLPFYPSPRRDDGYDISEYK 120 Query: 121 NVHPDYGNMSDVRRFIAAAHEHGLRVITELVINHTSDQHPWFQRARRARPGSVARNFYVW 180 NVHPDYGNMSDVRRFIAAAHEHGLRVITELVINHTSDQHPWFQRARRARPGSVARNFYVW Sbjct: 121 NVHPDYGNMSDVRRFIAAAHEHGLRVITELVINHTSDQHPWFQRARRARPGSVARNFYVW 180 Query: 181 SDDDKSYADTRIIFVDTEKSNWTWDPVAKAYFWHRFYSHQPDLNFDNPHVLKAVLNVMSF 240 SDDDKSYADTRIIFVDTEKSNWTWDPVAKAYFWHRFYSHQPDLNFDNPHVLKAVLNVMSF Sbjct: 181 SDDDKSYADTRIIFVDTEKSNWTWDPVAKAYFWHRFYSHQPDLNFDNPHVLKAVLNVMSF 240 Query: 241 WLDLGIDGLRLDAVPYLIEREGTSNENLPETHAILKRIRAEMDSKYPDRMLLAEANMWPE 300 WLDLGIDGLRLDAVPYLIEREGTSNENLPETHAILKRIRAEMDSKYPDRMLLAEANMWPE Sbjct: 241 WLDLGIDGLRLDAVPYLIEREGTSNENLPETHAILKRIRAEMDSKYPDRMLLAEANMWPE 300 Query: 301 DVQQYFGDSDECHMAFHFPLMPRMYMALASQDRFPITDILRQTPDIPADCQWAIFLRNHD 360 DVQQYFGDSDECHMAFHFPLMPRMYMALASQDRFPITDILRQTPDIPADCQWAIFLRNHD Sbjct: 301 DVQQYFGDSDECHMAFHFPLMPRMYMALASQDRFPITDILRQTPDIPADCQWAIFLRNHD 360 Query: 361 ELTLEMVTDAERDYLWNHYAPDRRARINLGIRRRLAPLVERDWRRIQLLNSFLLSMPGTP 420 ELTLEMVTDAERDYLWNHYAPDRRARINLGIRRRLAPLVERDWRRIQLLNSFLLSMPGTP Sbjct: 361 ELTLEMVTDAERDYLWNHYAPDRRARINLGIRRRLAPLVERDWRRIQLLNSFLLSMPGTP 420 Query: 421 VIYYGDEIGMGDNIHLGDRDGVRTPMQWTPDRNGGFSRVDPARLVLPLLMDPQYGYQTIN 480 VIYYGDEIGMGDNIHLGDRDGVRTPMQWTPDRNGGFSRVDPARLVLPLLMDPQYGYQTIN Sbjct: 421 VIYYGDEIGMGDNIHLGDRDGVRTPMQWTPDRNGGFSRVDPARLVLPLLMDPQYGYQTIN 480 Query: 481 VEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIFAYLREFTDPRPGGATE 540 VEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIFAYLREFTDPRPGGATE Sbjct: 481 VEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIFAYLREFTDPRPGGATE 540 Query: 541 TILCVANVSQSAQAVELDLSAFAGRIPIEMMGGAAFPPIGQLNYLLTLPPFGFYWFLLAP 600 TILCVANVSQSAQAVELDLSAFAGRIPIEMMGGAAFPPIGQLNYLLTLPPFGFYWFLLAP Sbjct: 541 TILCVANVSQSAQAVELDLSAFAGRIPIEMMGGAAFPPIGQLNYLLTLPPFGFYWFLLAP 600 Query: 601 EANMPSWRAPTPEPLPEYVTLVLRKGVQEIMEPPARKLLEQEVLPHYLLKRRWYAGKQRQ 660 EANMPSWRAPTPEPLPEYVTLVLRKGVQEIMEPPARKLLEQEVLPHYLLKRRWYAGKQRQ Sbjct: 601 EANMPSWRAPTPEPLPEYVTLVLRKGVQEIMEPPARKLLEQEVLPHYLLKRRWYAGKQRQ 660 Query: 661 IDKVEMREATTLPMSRTRPGALPIVLTEIDVHSSGTEGDAGAGSVQRYLLPLGFIREEDT 720 IDKVEMREATTLPMSRTRPGALPIVLTEIDVHSSGTEGDAGAGSVQRYLLPLGFIREEDT Sbjct: 661 IDKVEMREATTLPMSRTRPGALPIVLTEIDVHSSGTEGDAGAGSVQRYLLPLGFIREEDT 720 Query: 721 VSALPHQLALSRVRRGRNVGFLTDAFALDSFIVAVLELLADSASIKTRSGQLRCIPTAAF 780 VSALPHQLALSRVRRGRNVGFLTDAFALDSFIVAVLELLADSASIKTRSGQLRCIPTAAF Sbjct: 721 VSALPHQLALSRVRRGRNVGFLTDAFALDSFIVAVLELLADSASIKTRSGQLRCIPTAAF 780 Query: 781 DPSILTTALELRRITQEQSNSSVVINNV-MMKVLRQVNPGIHPEIEMGRYLTERGFANVA 839 DP+ILTTALELRRITQEQSNSSVVINNV MMKVLRQVNPGIHPEIEMGRYLTERGFANVA Sbjct: 781 DPAILTTALELRRITQEQSNSSVVINNVMMMKVLRQVNPGIHPEIEMGRYLTERGFANVA 840 Query: 840 ATLGEVVRVADDGTPYALIVLQRYVDNQGDAWQWSMDTLERAIQSEALDESQRQPNTRPQ 899 ATLGEVVRVADDGTPYALIVLQRYVDNQGDAWQWSMDTLERAIQSEALDESQRQPNTRPQ Sbjct: 841 ATLGEVVRVADDGTPYALIVLQRYVDNQGDAWQWSMDTLERAIQSEALDESQRQPNTRPQ 900 Query: 900 DAQGMDDNSALVELVTFSRLLGQRLGEMHSLLGQPSDDPAFDPQTIGEPVWRSWAQGAAQ 959 DAQG+DDNSALVELVTFSRLLGQRLGEMHSLLGQPSDDPAFDPQTIGEPVWRSWAQGAAQ Sbjct: 901 DAQGIDDNSALVELVTFSRLLGQRLGEMHSLLGQPSDDPAFDPQTIGEPVWRSWAQGAAQ 960 Query: 960 QLEAALDILRQKEAWPNAAEAHHAARLLAQRERLLERIHPLAQAAEGSLAMRLHGDLHLG 1019 QLEAALDILRQKE WP+AAEAHHAARLLAQRERLLERIHPLAQAAEGSLAMRLHGDLHLG Sbjct: 961 QLEAALDILRQKEEWPDAAEAHHAARLLAQRERLLERIHPLAQAAEGSLAMRLHGDLHLG 1020 Query: 1020 QVLIAFNDVYIVDFEGEPARPLEQRRAKGSPLRDVAGLLRSFDYAAAFGHTMGPTDLDEA 1079 QVLIAFNDVYIVDFEGEPARPLEQRRAKGSPLRDVAGLLRSFDYAAAFGHTMGPTDLDEA Sbjct: 1021 QVLIAFNDVYIVDFEGEPARPLEQRRAKGSPLRDVAGLLRSFDYAAAFGHTMGPTDLDEA 1080 Query: 1080 ALASKKQILQRFAPACQAALLEGYRLGNPLLEQSLPLDAQALLLDLFTLEKAAYEICYEA 1139 ALASKKQILQRFAPACQAALLEGYRLGNPLLEQSLPLDAQALLLDLFTLEKAAYEICYEA Sbjct: 1081 ALASKKQILQRFAPACQAALLEGYRLGNPLLEQSLPLDAQALLLDLFTLEKAAYEICYEA 1140 Query: 1140 ANRPTWMHVPLRGLYLIANRILGEEDGA 1167 ANRPTWMHVPLRGLYLIANRILGEEDGA Sbjct: 1141 ANRPTWMHVPLRGLYLIANRILGEEDGA 1168 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,729,816 Number of extensions: 161288 Number of successful extensions: 443 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 442 Number of HSP's successfully gapped: 1 Length of query: 1167 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1071 Effective length of database: 1,165,310 Effective search space: 1248047010 Effective search space used: 1248047010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)