BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0353.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme... 384 e-108 gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme... 192 3e-50 gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme... 148 3e-37 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 55 6e-09 >gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 199 Score = 384 bits (985), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/199 (100%), Positives = 199/199 (100%) Query: 22 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 81 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 82 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 141 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 142 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 201 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180 Query: 202 LVSLVQRTGDSYVRRLRNR 220 LVSLVQRTGDSYVRRLRNR Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199 >gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 192 bits (487), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 150/212 (70%) Query: 9 IERYGNALLDTLQMVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRA 68 I+ + ++ +TL MV +SG + + G+PL + L ++ G L +R+ G ++N R+ Sbjct: 6 IDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLVNAVRS 65 Query: 69 TPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQA 128 TPFI+LLVA+IP+TR GT+IG AAIVPL I+A PF AR+VE +LREVD GLVEAAQA Sbjct: 66 TPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLVEAAQA 125 Query: 129 LGCRKWDIVWHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFD 188 +G W I++ V +PEA GIV G TIT V+L+ SAMAGA+G GGLGDL IRYGYQRF Sbjct: 126 MGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQRFL 185 Query: 189 TQVMVIVIAMLIVLVSLVQRTGDSYVRRLRNR 220 +VM+ V+ +LIV V LVQ GD VR+L +R Sbjct: 186 PEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 229 Score = 148 bits (374), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/154 (52%), Positives = 110/154 (71%) Query: 67 RATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAA 126 R+ PF++LL+ LIP T + GT++GV AI PL I PFFAR+ E LRE+D G++EA Sbjct: 76 RSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEAC 135 Query: 127 QALGCRKWDIVWHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQR 186 A+G R+ I++ LPEALPG++ TIT + L+S +AM+G +G GGLGDLAIRYGYQR Sbjct: 136 TAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQR 195 Query: 187 FDTQVMVIVIAMLIVLVSLVQRTGDSYVRRLRNR 220 F T+VMV+ +A+L+VLV L+Q GD V R + Sbjct: 196 FQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 54.7 bits (130), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 12/192 (6%) Query: 19 TLQMVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVAL 78 TL+M + LA++ GV + + + A W L R + I R TPF+V + L Sbjct: 24 TLKMTT----LAVIVGVAIGIF-VAFAKNSPHRW--LARGCSAYIEVVRNTPFLVQIFLL 76 Query: 79 -IPLTRLVAGTTIGVWAA-IVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDI 136 L L G + +AA ++ + I+ + A I+ L V G +EAAQ LG W I Sbjct: 77 YFGLASL--GIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIEAAQCLGLSVWRI 134 Query: 137 VWHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDT-QVMVIV 195 WHV L A+ + T + ++ +SAMA + A L +A F + + ++V Sbjct: 135 RWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTFRSLETYLVV 194 Query: 196 IAMLIVLVSLVQ 207 A+ +VL LV+ Sbjct: 195 AALYLVLAILVK 206 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 565,064 Number of extensions: 20439 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 10 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)