BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0352.p (389 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 759 0.0 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 296 2e-81 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 290 1e-79 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 184 1e-47 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 181 7e-47 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/389 (99%), Positives = 386/389 (99%) Query: 1 MELSITARQSLTAPSRPEHVREPTVALATPARSGPHGKVALRGVGKTYVSAAGPVQALQD 60 MELSITARQSLTAPSRPEHVREPTVALATPAR GPHGKVALRGVGKTYVSAAGPVQALQD Sbjct: 1 MELSITARQSLTAPSRPEHVREPTVALATPARGGPHGKVALRGVGKTYVSAAGPVQALQD 60 Query: 61 IDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVALRRR 120 IDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVALRRR Sbjct: 61 IDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVALRRR 120 Query: 121 IGMIFQHFNLLVAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPRRLSG 180 IGMIFQHFNLL AKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPRRLSG Sbjct: 121 IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPRRLSG 180 Query: 181 GQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHEMSV 240 GQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHEMSV Sbjct: 181 GQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHEMSV 240 Query: 241 IREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQPQALAG 300 IREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQPQA AG Sbjct: 241 IREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQPQAPAG 300 Query: 301 RHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVLAVADAPASH 360 RHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVLAVADAPASH Sbjct: 301 RHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVLAVADAPASH 360 Query: 361 DWLALTQGAQAIAHHIKELGYVADPVHSH 389 DWLALTQGAQAIAHHIKELGYVADPVHSH Sbjct: 361 DWLALTQGAQAIAHHIKELGYVADPVHSH 389 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 296 bits (757), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/304 (52%), Positives = 210/304 (69%), Gaps = 5/304 (1%) Query: 53 GPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDET 112 G V+A++ +DL I G IFGIIGRSGAGKS+L+RT+N L RPTSGR+ +D DL +L Sbjct: 12 GNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAA 71 Query: 113 QLVALRRRIGMIFQHFNLLVAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKAD 172 QL RR IGMIFQHFNLL +++V+DNIALPL +AG +A+I +V LL LVGL D Sbjct: 72 QLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTALRD 131 Query: 173 SYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITII 232 YP ++SGGQKQRVGIARALA+ P++LL DEATSALDPETT+SIL+LLR IN++LG+TI+ Sbjct: 132 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIV 191 Query: 233 LITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAP-LQHGLPQELQQ 291 LITH+M VI++I DRV V+E G+V E GEV VF +P+H TRAL+ + H LP+ + Sbjct: 192 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLA 251 Query: 292 ALQP---QALAGR-HERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHG 347 L+ +A AG+ + + + F G D QP L +L +D IQG G Sbjct: 252 RLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFG 311 Query: 348 QLVL 351 L + Sbjct: 312 SLAI 315 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 290 bits (743), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/315 (52%), Positives = 210/315 (66%), Gaps = 8/315 (2%) Query: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 KTY + + AL+DI+L+IA G +FGIIGRSGAGKS+L+RT+N LERP SGRV +D D Sbjct: 9 KTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGED 68 Query: 106 LATLDETQLVALRRRIGMIFQHFNLLVAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 + L L+ LR+R+GM+FQHFNLL AKTV NI PL++ G R + RV ELL L Sbjct: 69 ITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQL 128 Query: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 VGL D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQSIL+LL +IN Sbjct: 129 VGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEIN 188 Query: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 RKLG+TI+LITHEM VIR I DRV VL+ G VAE G V +F +PQHA TR+LL Sbjct: 189 RKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLTQSHAW 248 Query: 285 LPQELQQALQPQALAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGH 344 E +P ++++L + G QP L ++ A +++ V I+ Sbjct: 249 DAGESLYQRRPDG------KLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIKDT 302 Query: 345 THGQLVLAVA-DAPA 358 +GQL++ + DA A Sbjct: 303 PYGQLLVEFSGDADA 317 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/233 (42%), Positives = 146/233 (62%), Gaps = 7/233 (3%) Query: 39 VALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGR 98 +A+ V K + G + L+ I L++ PG + IIG+SG+GKS+LLR IN LE G Sbjct: 4 IAIDNVKKRF----GDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGN 59 Query: 99 VEVDDVDLATLDETQLVALRRRIGMIFQHFNLLVAKTVFDNIAL-PLRVAGVPRAQITQR 157 + V L E +L LR ++GMIFQ FNL +V N+ + P+ V GV A+ + Sbjct: 60 ISVAGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKT 118 Query: 158 VHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSIL 217 L VGL K D+YP +LSGGQ+QRV IARAL+ P+ LLCDE TSALDPE +L Sbjct: 119 AKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVL 178 Query: 218 QLLRDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQ 270 ++R + ++ G+T++++THEM RE+ +R++ + QG+V E+G ++FG P+ Sbjct: 179 TVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPK 230 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 156/242 (64%), Gaps = 6/242 (2%) Query: 39 VALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGR 98 V ++ + K++ G + L + L++ G + IIG+SG+GKS+LLR +N LE+ +G Sbjct: 5 VKIKDLHKSF----GSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 99 VEVDDVDLATLDETQLVALRRRIGMIFQHFNLLVAKTVFDNIALPLR-VAGVPRAQITQR 157 ++V D+ D+ L LR+++G++FQ +NL TV NI L L + + Q Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 158 VHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSIL 217 H++L LVGL++K D+YP +LSGGQ QRV IAR+LA PE++L DE TSALDPE T +L Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 218 QLLRDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRAL 277 +++ D+ R G+T++L+THEM+ R++AD ++ + QG+V E+G ++F P+ A + Sbjct: 181 KVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKF 239 Query: 278 LA 279 ++ Sbjct: 240 VS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,252,286 Number of extensions: 53596 Number of successful extensions: 612 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 386 Number of HSP's successfully gapped: 150 Length of query: 389 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 302 Effective length of database: 1,207,925 Effective search space: 364793350 Effective search space used: 364793350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)