BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0351.p (268 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 539 e-154 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 154 9e-39 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 144 6e-36 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 139 2e-34 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 121 6e-29 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 539 bits (1388), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/268 (99%), Positives = 268/268 (100%) Query: 1 MKFSHLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDW 60 MKFSHLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDW Sbjct: 1 MKFSHLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDW 60 Query: 61 TTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQ 120 TTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQ Sbjct: 61 TTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQ 120 Query: 121 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIVDNPRKLSFVEVEGPQLVR 180 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDI+DNPRKLSFVEVEGPQLVR Sbjct: 121 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVR 180 Query: 181 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFIQIY 240 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFIQIY Sbjct: 181 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFIQIY 240 Query: 241 QNSAAVRADIGRAFNHDSRLYTLAWLKK 268 QNSAAVRADIGRAFNHDSRLYTLAWLKK Sbjct: 241 QNSAAVRADIGRAFNHDSRLYTLAWLKK 268 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 154 bits (388), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 136/254 (53%), Gaps = 10/254 (3%) Query: 2 KFSHLVFLSLTVLSLQAAQAADK-LRIGVVPGAYGDSVAVAAK--EAKRQGIDVQVVEFT 58 + S L+ L L L A AAD+ +R+GV G + A + E G V+++EF Sbjct: 11 RLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFN 70 Query: 59 DWTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTAL 118 D+ PN ALDAG+LD N +QH+PFL+ I+ GYKL + G ++ + +YS KY+ L + Sbjct: 71 DYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLEDV 130 Query: 119 PQGAKVGIANDPVNQGRALLLLQNVGLIKLK----PKVGYLGSIDDIVDNPRKLSFVEVE 174 P GA++GI NDP N+ R LLLLQ G IKL+ P G + DI +NP+K FVE++ Sbjct: 131 PVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVEID 190 Query: 175 GPQLVRITPDVDLAQGYPHFIVAAKA-FDPSSGLAYSGIEDARFAIQFVTRANRVNDPVV 233 QL R D+D + + AAKA +P+ D+ +A R P + Sbjct: 191 AAQLPRTLDDLDASAVNADY--AAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 248 Query: 234 QKFIQIYQNSAAVR 247 K +Q YQ+ R Sbjct: 249 GKLVQAYQSPEVKR 262 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 146/256 (57%), Gaps = 18/256 (7%) Query: 9 LSLTVL-SLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVAL 67 LSL ++ L AQ K+++G+ G+ V K A R G+++Q V F+D+ PN AL Sbjct: 19 LSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAAL 78 Query: 68 DAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIA 127 AGDLD N FQH+P+L++ I GY++ G I + +G+YS K++S+ LPQGA +GI Sbjct: 79 AAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQLPQGAAIGIQ 138 Query: 128 NDPVNQGRALLLLQNVGLIKLKPKVGYLG---SIDDIVDNPRKLSFVEVEGPQLVRITPD 184 NDP N RALLLLQ GLI+LKP VG G + D+++NPRKL VE++ QL R D Sbjct: 139 NDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDAAQLPRSLDD 198 Query: 185 VDLAQGYPHFIVAAKAFDPSSGLAYS----GIED--ARFAIQFVTRANRVNDPVVQKFIQ 238 + A I AF +GL+ +ED R+A TRA + P V+K +Q Sbjct: 199 LAAAS-----INNDYAF--KAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKLVQ 251 Query: 239 IYQNSAAVRADIGRAF 254 Y +S VR I F Sbjct: 252 AY-HSEEVRKFIETEF 266 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/168 (47%), Positives = 109/168 (64%) Query: 21 AADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDAGDLDLNYFQHQ 80 A D++++GV G + + + K ++ G+ ++V+EFTD+ PN AL AGDLD N +QHQ Sbjct: 26 AQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYIQPNAALAAGDLDANSYQHQ 85 Query: 81 PFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQGRALLLL 140 P+LD I+ GYK S G+ I +G+YS K KSL L QGA+VG+ NDP N GRALL+L Sbjct: 86 PYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKQGARVGVPNDPTNGGRALLVL 145 Query: 141 QNVGLIKLKPKVGYLGSIDDIVDNPRKLSFVEVEGPQLVRITPDVDLA 188 Q G+IKLK G + DIV+NP+K+ VE++ QL R D D A Sbjct: 146 QAKGVIKLKADAGLKATPLDIVENPKKIKIVELDAAQLPRSLDDFDAA 193 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 121 bits (304), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 113/222 (50%), Gaps = 8/222 (3%) Query: 19 AQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDAGDLDLNYFQ 78 A AADKL I P + + + ++GID+QV FTD+ P + +D N+F Sbjct: 21 AHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFTDYVQPAAQTNEKQVDGNFFL 80 Query: 79 HQPFLD--NAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQGRA 136 HQP+LD KN ++ A + YS KYK + +P GA + I NDP N GRA Sbjct: 81 HQPYLDQFKKSHKNDIEVPVAKVHV-EPFAAYSQKYKKIADIPNGATIAIPNDPSNSGRA 139 Query: 137 LLLLQNVGLIKLKPKVGYLGSIDDIVDNPRKLSFVEVEGPQLVRITPDVDLAQGYPHFIV 196 LLLL GLIKLK + DIV+NP+KL F +E L R+ VD+A ++ + Sbjct: 140 LLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAATLPRVLNQVDVALINTNYAL 199 Query: 197 AAKAFDPSSGLAYSGIEDAR--FAIQFVTRANRVNDPVVQKF 236 AK +P + IEDA +A V R + + P ++K Sbjct: 200 EAK-LNPVKDSLF--IEDANSPYANLLVAREDNKDSPAIKKL 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 831,841 Number of extensions: 35001 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 5 Length of query: 268 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 184 Effective length of database: 1,222,130 Effective search space: 224871920 Effective search space used: 224871920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)