BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0349.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   426   e-120
gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   142   2e-35

>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  426 bits (1094), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/206 (99%), Positives = 206/206 (100%)

Query: 1   MNKALTMTIASTLLAGSLAQAADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLM 60
           MNKALTMTIASTLLAGSLAQAADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLM
Sbjct: 1   MNKALTMTIASTLLAGSLAQAADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLM 60

Query: 61  HSPQVMTQARAMGDYLRYHSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120
           HSPQVMTQARAMGDYLRYHSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI
Sbjct: 61  HSPQVMTQARAMGDYLRYHSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120

Query: 121 AAAIADGRRPEGMSEDETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYY 180
           AAAIADGRRPEGMSE+ETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYY
Sbjct: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYY 180

Query: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206
           TLLAMQMNAAQYQAPKDAKRLVRFPE
Sbjct: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206


>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 110/185 (59%)

Query: 22  ADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLMHSPQVMTQARAMGDYLRYHSA 81
           ++RLP I  EQ T EQ    D  LA  +  + GPF   +HSP +   A+ +G + RY + 
Sbjct: 4   SNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYETG 63

Query: 82  IGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEDETIVY 141
           +   LSEL IL TA  W    EW++H PIA++AGI P++A  I  G  P+   EDE +++
Sbjct: 64  LPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVIW 123

Query: 142 DFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMNAAQYQAPKDAKRL 201
           +F+ EL+R+KRVS++T+A A   FG   VV+L G+  YY L+AM +NA   +A    +  
Sbjct: 124 NFANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEGD 183

Query: 202 VRFPE 206
           + F E
Sbjct: 184 LPFAE 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 629,658
Number of extensions: 25290
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)