BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0348.p
         (836 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320...  1527   0.0  

>gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320
           [Herbaspirillum seropedicae SmR1]
          Length = 838

 Score = 1527 bits (3954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/838 (97%), Positives = 824/838 (98%), Gaps = 2/838 (0%)

Query: 1   MNATTQHTQSALAATPDAAWESALEQACAQACAAIAPAWPLDRAIAVNPHWSRIGMPLRE 60
           MNATTQHTQSALAATPDAAWESAL+QACAQACAAIAPAWPLDRAIAVNPHWSRIGMPLRE
Sbjct: 1   MNATTQHTQSALAATPDAAWESALDQACAQACAAIAPAWPLDRAIAVNPHWSRIGMPLRE 60

Query: 61  VAARMALLGGIQVLPARAQLRQAWAEGRINAADLHLALGRLPAARAAGLDAAHCQAVLAS 120
           VAARMALLGGIQVLPARAQLRQAWAEGRI+AADLHLALGRLPAARAAGLDAAHCQAVLAS
Sbjct: 61  VAARMALLGGIQVLPARAQLRQAWAEGRISAADLHLALGRLPAARAAGLDAAHCQAVLAS 120

Query: 121 DSRPAQLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFDRHQADWQPERDNGLYAF 180
           DSRPAQLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFDRHQADWQPERDNGLYAF
Sbjct: 121 DSRPAQLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTCAAYFDRHQADWQPERDNGLYAF 180

Query: 181 WRETLEHDHGIGLLMGLPHIADGIRALPACAREAERWVMQRLGLPAEVWADYLEAVLLTV 240
           WRETLEHDHGIGLLMGLPHIA GI+ALPACAREAERWVMQRLGLPAEVWADYLEAVLLTV
Sbjct: 181 WRETLEHDHGIGLLMGLPHIAHGIQALPACAREAERWVMQRLGLPAEVWADYLEAVLLTV 240

Query: 241 NGWASWCAYLGWQARLQGQEDAHLRELLAIRMAWGALLLECKDDTAASQAFGAVQEAWGR 300
           NGWASWCAYLGWQARLQGQ+D HLRELLAIRMAWGALLLECKDD AA+QAF  VQ+AWGR
Sbjct: 241 NGWASWCAYLGWQARLQGQDDPHLRELLAIRMAWGALLLECKDDDAATQAFSTVQQAWGR 300

Query: 301 ARERLQQVRDALLVDEVWQLALEAGYQRQLAQALLQDRPAAGAAIEVQAAFCIDVRSEPM 360
           ARERLQQVRD L+VDEVWQLALE GYQRQLAQALLQDR AAGAAIEVQAAFCIDVRSEPM
Sbjct: 301 ARERLQQVRDELVVDEVWQLALEVGYQRQLAQALLQDRTAAGAAIEVQAAFCIDVRSEPM 360

Query: 361 RRALERLHPGVQTLGVAGFFGLPVAYTPLGTQAARPQLPGLLAPAYQVQEQIIPAAGAGA 420
           RRALERLHPGVQTLGVAGFFGLPVAYTPLGTQAARPQLPGLLAPAYQVQEQIIPAAGAGA
Sbjct: 361 RRALERLHPGVQTLGVAGFFGLPVAYTPLGTQAARPQLPGLLAPAYQVQEQIIPAAGAGA 420

Query: 421 A--DSTVLASASHRARHRQLAGKAQWQGNTRWPGSAFSFVEVAGVSALGGLWNWLRPGRG 478
              DSTVLASA+ RARHRQLAGKAQWQGNTRWPGSAFSFVEVAGVSALGGLWNWLRPGRG
Sbjct: 421 GAADSTVLASAAARARHRQLAGKAQWQGNTRWPGSAFSFVEVAGVSALGGLWNWLRPGRG 480

Query: 479 ARARDDLAGLPARYRALCRPQLSGVSEADKVALAARILHAMGLDRAVAPLVLLVGHGSQS 538
           ARARDDLAGLP RYRALCRPQLSGVSEADKVALAARILHAMGLDRAVAPLVLLVGHGSQS
Sbjct: 481 ARARDDLAGLPTRYRALCRPQLSGVSEADKVALAARILHAMGLDRAVAPLVLLVGHGSQS 540

Query: 539 ANNAHAAALDCGACCGQTGEVNARTLAQLLNEHSVRRGLLAQGVHLPEETAFLALLHNTT 598
           ANNAHAAALDCGACCGQTGEVNARTLAQLLNEHSVRRGLLAQGV LPEETAFLALLHNTT
Sbjct: 541 ANNAHAAALDCGACCGQTGEVNARTLAQLLNEHSVRRGLLAQGVDLPEETAFLALLHNTT 600

Query: 599 TDEVEAFDLDLLPAPAQQRWAAMREVFARAGEQVRRERAARLGLDGEQPAARLLQALRRR 658
           TDEVEAFDLDLLPAPAQQRWAAMREVFARAGEQVRRERAARLGLDGEQPAARLLQALRRR
Sbjct: 601 TDEVEAFDLDLLPAPAQQRWAAMREVFARAGEQVRRERAARLGLDGEQPAARLLQALRRR 660

Query: 659 ANDGAQTRPEWGLTGNAAFLIAPRARSRGIDLGGRCFLHDYDPTEDGEGALLEQLMTAPM 718
           ANDGAQTRPEWGLTGNAAFLIAPRARSRGIDLGGRCFLHDYDPTEDGEGALLEQLMTAPM
Sbjct: 661 ANDGAQTRPEWGLTGNAAFLIAPRARSRGIDLGGRCFLHDYDPTEDGEGALLEQLMTAPM 720

Query: 719 LVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGAIGVFEGNGGDLRIGLARQSLHDGQRW 778
           LVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGAIGVFEGNGGDLRIGLARQSLHDGQRW
Sbjct: 721 LVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGAIGVFEGNGGDLRIGLARQSLHDGQRW 780

Query: 779 LHEPLRLTVVIDAPEAAIERVIAAHAVVRQLLENGWLHLWRFGEAGLLERGKQGWVAV 836
           LHEPLRLTVVIDAPEAAIERVIAAHAVVRQLLENGWLHLWRFGEAGLLERG+QGWVAV
Sbjct: 781 LHEPLRLTVVIDAPEAAIERVIAAHAVVRQLLENGWLHLWRFGEAGLLERGEQGWVAV 838


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,844,688
Number of extensions: 129208
Number of successful extensions: 447
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 1
Length of query: 836
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 743
Effective length of database: 1,179,515
Effective search space: 876379645
Effective search space used: 876379645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)