BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0347.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase ...   903   0.0  
gi|300311106|ref|YP_003775198.1| transmembrane NADH dehydrogenas...   119   7e-28

>gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase
           subunit L/Multisubunit Na+/H+ antiporter MnhA subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 536

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/478 (99%), Positives = 474/478 (99%)

Query: 1   MLALALAVLSLCLARGARPWPGVLQVSVIGLVLAVLVQGLGAVIGAFSARYLQGEGGQRQ 60
           MLAL LAVLSLCLARGA PWPGVLQVSVIGLVLAVLVQGLGAVIGAFSARYLQGEGGQRQ
Sbjct: 59  MLALTLAVLSLCLARGATPWPGVLQVSVIGLVLAVLVQGLGAVIGAFSARYLQGEGGQRQ 118

Query: 61  YAVALAAVLTAVHLLLLADHWLVLIAAWAAVGLALEHLLCFYPERPFARLAAYKKRIADR 120
           YAVALAAVLTAVHLLLLADHWLVLIAAWAAVGLALEHLLCFYPERPFARLAAYKKRIADR
Sbjct: 119 YAVALAAVLTAVHLLLLADHWLVLIAAWAAVGLALEHLLCFYPERPFARLAAYKKRIADR 178

Query: 121 LADLLLGVAALLAWSATGSGSLSALWQHLAAHGMSAGLQVSALCVVLAVILRTALLPVHG 180
           LADLLLGVAALLAWSATGSGSLSALWQHLAAHGMSAGLQVSALCVVLAVILRTALLPVHG
Sbjct: 179 LADLLLGVAALLAWSATGSGSLSALWQHLAAHGMSAGLQVSALCVVLAVILRTALLPVHG 238

Query: 181 WLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAPLLQQAIPARSVLLLMAVATVLLAGMVM 240
           WLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAPLLQQAIPARSVLLLMAVATVLLAGMVM
Sbjct: 239 WLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAPLLQQAIPARSVLLLMAVATVLLAGMVM 298

Query: 241 LTRISIKVRLAWSTVAQMGFMLLECAAGLYTFAALHLIGHSLYKAHAFLSASSVVRETRL 300
           LTRISIKVRLAWSTVAQMGFMLLECAAGLYTFAALHLIGHSLYKAHAFLSASSVVRETRL
Sbjct: 299 LTRISIKVRLAWSTVAQMGFMLLECAAGLYTFAALHLIGHSLYKAHAFLSASSVVRETRL 358

Query: 301 QALHDKAQPSAASVIVAPLASSAVVLALQTLHAHTGWPWWWSVVLGLAWAPLLWLPQTST 360
           QALHDKAQPSAASVIVAPLASSAVVLALQTLHAHTGWPWWWSVVLGLAWAPLLWLPQ ST
Sbjct: 359 QALHDKAQPSAASVIVAPLASSAVVLALQTLHAHTGWPWWWSVVLGLAWAPLLWLPQAST 418

Query: 361 VSTAMRLRSWLLGLTGAAGLTVAAMLLHLLPLGLDDFAQPLFGMATLAGMLALYGCVALL 420
           VSTAMRLRSWLLGLTGAAGLTVAAMLLHLLPLGLDDFAQPLFGMATLAGMLALYGCVALL
Sbjct: 419 VSTAMRLRSWLLGLTGAAGLTVAAMLLHLLPLGLDDFAQPLFGMATLAGMLALYGCVALL 478

Query: 421 LVRPQAMTAWRRRSYAGFYLDEAYTRLALQLWPARWAPQARRAPHRATPSTLASDTQG 478
           LVRPQAMTAWRRRSYAGFYLDEAYTRLALQLWPARWAPQARRAPHRA PSTLASDTQG
Sbjct: 479 LVRPQAMTAWRRRSYAGFYLDEAYTRLALQLWPARWAPQARRAPHRAPPSTLASDTQG 536


>gi|300311106|ref|YP_003775198.1| transmembrane NADH dehydrogenase I
           subunit L [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score =  119 bits (297), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 143/259 (55%), Gaps = 12/259 (4%)

Query: 47  FSARYLQGEGGQRQYAVALAAVLTAVHLLLLADHWLVLIAAWAAVGLALEHLLCFYPERP 106
           ++  Y+  + G  ++   ++    ++ +L++++++L L   W AVGL    L+ F+  RP
Sbjct: 111 YTIGYMAEDEGYNRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRP 170

Query: 107 FARLAAYKKRIADRLADL--LLGVAALLAWSATGSGSLSALWQHLA--AHGMSAG----- 157
            A  A  K  + +R+ D   +LG+  LLA++  GS + + ++   A  A     G     
Sbjct: 171 TAIKANMKAFLVNRVGDFGFILGIGLLLAYA--GSMNYTEVFDKRAELAQLTLPGTDWML 228

Query: 158 LQVSALCVVLAVILRTALLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLQ 216
           L V+ +C+ +  + ++A  P+H WL   ME PTP+SAL+HA  +V  G F++ R +PL +
Sbjct: 229 LTVACICLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFE 288

Query: 217 QAIPARSVLLLMAVATVLLAGMVMLTRISIKVRLAWSTVAQMGFMLLECAAGLYTFAALH 276
            +  A S +L++   T L  G +   +  IK  +A+ST++Q+G+M +   A  Y+ A  H
Sbjct: 289 LSDTALSFILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFH 348

Query: 277 LIGHSLYKAHAFLSASSVV 295
           L+ H+ +KA  FL A SV+
Sbjct: 349 LMTHAFFKALLFLGAGSVI 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 982,670
Number of extensions: 29657
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 4
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)