BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0338.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311625|ref|YP_003775717.1| cytochrome c oxidase polypeptid...   402   e-113

>gi|300311625|ref|YP_003775717.1| cytochrome c oxidase polypeptide
           II precursor transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 200

 Score =  402 bits (1032), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/200 (99%), Positives = 199/200 (99%)

Query: 3   MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS 62
           MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS
Sbjct: 1   MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS 60

Query: 63  APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFG 122
           APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEF 
Sbjct: 61  APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFA 120

Query: 123 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW 182
           SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW
Sbjct: 121 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW 180

Query: 183 YFVVISWLAIYAVIYWGPRF 202
           YFVVISWLAIYAVIYWGPRF
Sbjct: 181 YFVVISWLAIYAVIYWGPRF 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 511,662
Number of extensions: 14456
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)