BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0336.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311623|ref|YP_003775715.1| cytochrome c1 protein [Herbaspi...   249   6e-68
gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum...   103   5e-24

>gi|300311623|ref|YP_003775715.1| cytochrome c1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  249 bits (635), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/124 (99%), Positives = 124/124 (100%)

Query: 1   MKPSILPELLLLTTCLAAPACPAAEPADAQQGRRLLATHGCAACHSIPGIAPGQTLVGPP 60
           MKPSILPELLLLTTCLAAPACPAAEPA+AQQGRRLLATHGCAACHSIPGIAPGQTLVGPP
Sbjct: 1   MKPSILPELLLLTTCLAAPACPAAEPANAQQGRRLLATHGCAACHSIPGIAPGQTLVGPP 60

Query: 61  LDQVAKASYVAGILPNSQANLARWIMHPRHFHPQSAMPELGLSEQEAADMAAYLYQVSPK 120
           LDQVAKASYVAGILPNSQANLARWIMHPRHFHPQSAMPELGLSEQEAADMAAYLYQVSPK
Sbjct: 61  LDQVAKASYVAGILPNSQANLARWIMHPRHFHPQSAMPELGLSEQEAADMAAYLYQVSPK 120

Query: 121 RGQR 124
           RGQR
Sbjct: 121 RGQR 124


>gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum
           seropedicae SmR1]
          Length = 273

 Score =  103 bits (256), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 63/101 (62%)

Query: 14  TCLAAPACPAAEPADAQQGRRLLATHGCAACHSIPGIAPGQTLVGPPLDQVAKASYVAGI 73
           T     A P     D ++GR  L  + C +CH IPG+    T VGP L  +A   YV+G 
Sbjct: 164 TVSGNDADPTQLAGDIERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGA 223

Query: 74  LPNSQANLARWIMHPRHFHPQSAMPELGLSEQEAADMAAYL 114
           LPN+  NLARWIMHP+ + P  AMPELG+S Q+AADMAAYL
Sbjct: 224 LPNTAGNLARWIMHPKRYKPGGAMPELGVSAQDAADMAAYL 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,821
Number of extensions: 13399
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)