BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0335.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum...   543   e-156
gi|300311623|ref|YP_003775715.1| cytochrome c1 protein [Herbaspi...   100   1e-22

>gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum
           seropedicae SmR1]
          Length = 273

 Score =  543 bits (1400), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/269 (99%), Positives = 268/269 (99%)

Query: 1   LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA 60
           LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA
Sbjct: 5   LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA 64

Query: 61  PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV 120
           PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV
Sbjct: 65  PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV 124

Query: 121 SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI 180
           SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI
Sbjct: 125 SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI 184

Query: 181 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG 240
           ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG
Sbjct: 185 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG 244

Query: 241 GAMPELGVSAQDAADMAAYLRDADRGKPP 269
           GAMPELGVSAQDAADMAAYLRDADRG PP
Sbjct: 245 GAMPELGVSAQDAADMAAYLRDADRGNPP 273


>gi|300311623|ref|YP_003775715.1| cytochrome c1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 59/85 (69%)

Query: 176 ERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPK 235
           ++GR  L  + C +CH IPG+    T VGP L  +A   YV+G LPN+  NLARWIMHP+
Sbjct: 30  QQGRRLLATHGCAACHSIPGIAPGQTLVGPPLDQVAKASYVAGILPNSQANLARWIMHPR 89

Query: 236 RYKPGGAMPELGVSAQDAADMAAYL 260
            + P  AMPELG+S Q+AADMAAYL
Sbjct: 90  HFHPQSAMPELGLSEQEAADMAAYL 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,721
Number of extensions: 42322
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)