BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0333.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induc...   334   2e-93
gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induc...   129   1e-31

>gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  334 bits (857), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 165/165 (100%)

Query: 1   MKQDYARLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVML 60
           MKQDYARLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVML
Sbjct: 1   MKQDYARLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVML 60

Query: 61  RVARADMQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWI 120
           RVARADMQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWI
Sbjct: 61  RVARADMQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWI 120

Query: 121 IHHPQGKTLRTARRQFAGDRQAVREQAAQHSILQTLRLLENLPPR 165
           IHHPQGKTLRTARRQFAGDRQAVREQAAQHSILQTLRLLE+LPPR
Sbjct: 121 IHHPQGKTLRTARRQFAGDRQAVREQAAQHSILQTLRLLESLPPR 165


>gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score =  129 bits (324), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 95/155 (61%), Gaps = 4/155 (2%)

Query: 7   RLGQLLCQQDMRLVTAESCTAGMVAAALGDVEGCGQWLEGAFVTYTEQAKEVMLRVARAD 66
           R+GQ L  + + L TAESCT G +A A+ ++ G  +W +  FVTY+  +K  +L ++ A 
Sbjct: 10  RVGQTLKAKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKNELLDISEAL 69

Query: 67  MQRYGLTSEEIAERMAQGALEGSAARVAIANTGVAGPDDAPDGTPAGTVCFAWIIHHPQG 126
           + ++G  SEEIA  MA+GA+  S++ VA++ TG+AGP  A  G P GTVCF W +    G
Sbjct: 70  IAQHGAVSEEIAGAMAEGAVANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWRV----G 125

Query: 127 KTLRTARRQFAGDRQAVREQAAQHSILQTLRLLEN 161
               T R  F GDRQ VR Q  +HS+   L+LL +
Sbjct: 126 DKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLLAD 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 539,192
Number of extensions: 22419
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)