BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0329.p (688 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine... 1385 0.0 gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine k... 525 e-150 gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 376 e-105 gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine... 283 3e-77 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 144 2e-35 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust. Identities = 686/688 (99%), Positives = 687/688 (99%) Query: 1 LEFQPATQSPPLLSSAYRHALLEAIDDGFCIIEFIDGPHGPLSDYVHIEANSGYHRHTGI 60 +EFQPATQSPPLLSSAYRHALLEAIDDGFCIIEFIDGPHGPLSDYVHIEANSGYHRHTGI Sbjct: 1 MEFQPATQSPPLLSSAYRHALLEAIDDGFCIIEFIDGPHGPLSDYVHIEANSGYHRHTGI 60 Query: 61 EGIVGKRLREVEPDNAQVWLDIYGKVLLTGQTVRFEQEFKAAARHIEVSATRVGPVEMRQ 120 EGIVGKRLREVEPDNAQVWLDIYGKVLLTGQTVRFEQEFKAAARHIEVSATRVGPVEMRQ Sbjct: 61 EGIVGKRLREVEPDNAQVWLDIYGKVLLTGQTVRFEQEFKAAARHIEVSATRVGPVEMRQ 120 Query: 121 VSVLFRDVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIP 180 VSVLFRDVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIP Sbjct: 121 VSVLFRDVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIP 180 Query: 181 AERGLDGIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGR 240 AERGLDGIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGR Sbjct: 181 AERGLDGIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGR 240 Query: 241 VEMTPDGIPSKFPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEA 300 VEMTPDGIPSKFPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEA Sbjct: 241 VEMTPDGIPSKFPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEA 300 Query: 301 LRQAQKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERHLNGAQSAVKR 360 LRQAQKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERHLNGAQSAVKR Sbjct: 301 LRQAQKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERHLNGAQSAVKR 360 Query: 361 AAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWHTFVDI 420 AAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWHTFVDI Sbjct: 361 AAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWHTFVDI 420 Query: 421 GQMENALLNLCINARDAMPHGGRLTIETANRWLDDIGALQRGVPPGQYVSLSVSDTGAGM 480 GQMENALLNLCINARDAMPHGGRLTIETANRWLDDIGALQRGVPPGQYVSLSVSDTGAGM Sbjct: 421 GQMENALLNLCINARDAMPHGGRLTIETANRWLDDIGALQRGVPPGQYVSLSVSDTGAGM 480 Query: 481 SPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCIYLPRHV 540 SPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCIYLPRHV Sbjct: 481 SPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCIYLPRHV 540 Query: 541 GEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYCVLEAEDGPSALR 600 GEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGY VLEAEDGPSALR Sbjct: 541 GEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYSVLEAEDGPSALR 600 Query: 601 VVEACQEIDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGM 660 VVEACQEIDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGM Sbjct: 601 VVEACQEIDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGM 660 Query: 661 QVLTKPFAADVLARRVKELVGEDDPGGH 688 QVLTKPFAADVLARRVKELVGEDDPGGH Sbjct: 661 QVLTKPFAADVLARRVKELVGEDDPGGH 688 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 845 Score = 525 bits (1351), Expect = e-150, Method: Compositional matrix adjust. Identities = 259/407 (63%), Positives = 320/407 (78%) Query: 274 AALRTLNETLEQRVEERTAALLNAEEALRQAQKMEAVGQLTGGLAHDFNNILAGISGSLE 333 A LR +NE+LE V RT L+ EEALR +QK+EA+GQLTGGLAHDFNN+L GISGSL+ Sbjct: 432 ARLRAINESLEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLD 491 Query: 334 LMKVRLAQGRIGDIERHLNGAQSAVKRAAALTQRLLAFSRRQTLDPKPADLNRIVAGMHE 393 LM+VRL QGR ++ R++ A + +RAA+LTQRLLAF+RRQTL PKP +N +++GM E Sbjct: 492 LMRVRLVQGRGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEE 551 Query: 394 LIGRSVGPAIAVETIAAGGLWHTFVDIGQMENALLNLCINARDAMPHGGRLTIETANRWL 453 LI R++GPAI +E + AGGLW TFVD Q+E+ALLNLCINARDAMP GGRLTIETAN+WL Sbjct: 552 LIRRTIGPAIVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWL 611 Query: 454 DDIGALQRGVPPGQYVSLSVSDTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFA 513 DD A +R +PPGQYV +SV+D+G GM P+V+ARAFDPFFTTKP G GTGLGLSMVYGFA Sbjct: 612 DDRWAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFA 671 Query: 514 GQSGGTVRIYSELGQGAMVCIYLPRHVGEGGVDDLALPEESHVPAAPGSKTILVVDDEPL 573 QSGG VR+YSE+GQG V IYLPRH +G D A + + +LVVDDE Sbjct: 672 RQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEAS 731 Query: 574 VRMVTVEVLRDLGYCVLEAEDGPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADAIRAP 633 +RM+ E+L D GY VL+AEDGP ALR++++ Q IDLL+TDVGLP G+NGRQ+ADA RA Sbjct: 732 IRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAA 791 Query: 634 RPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADVLARRVKELV 680 RPDL VLF+TGYAENA ++GHLERGMQ++TKPF + LARRV+ ++ Sbjct: 792 RPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSIL 838 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/560 (39%), Positives = 331/560 (59%), Gaps = 21/560 (3%) Query: 125 FRDVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIPAERG 184 F D+T RRR AL + R++ ++ + + DL V+ G E Sbjct: 553 FVDLTERRRGLQALSWSENRLRAIFNQASVCFSEL-DLQGRYLRVNQALCRMLGRSEEEM 611 Query: 185 LDGIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGRVEMT 244 L G+ L ++ HPDD + + + G ++ + R R DG +W+ ++ + Sbjct: 612 L-GMTLADV---THPDDVPMNMSLFNRCIEDGRSFTLEKRYLRPDGSTFWVSSDISRIVD 667 Query: 245 PDGIPSKFPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEALRQA 304 +G P V DI ER RA ALR LN+TLEQRV E AE ALRQ Sbjct: 668 GEGRPQAMIAVSTDI-------TERRRAEEALRELNDTLEQRVVEEILERSRAEAALRQM 720 Query: 305 QKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERH-LNGAQSAVKRAAA 363 QKMEAVGQLTGG+AHDFNN+L I G+L+L++ + R+ + R + A AV R A Sbjct: 721 QKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQ---SDPRLDERSRQRVRIAIGAVDRGAK 777 Query: 364 LTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWHTFVDIGQM 423 L+ +LLAF+RRQ L P+ +L R+V M +L+ R+VG I + T A LW+T +D Q+ Sbjct: 778 LSSQLLAFARRQPLQPRSINLERVVQNMDDLLRRAVGENIDISTRVAHDLWNTMLDPNQV 837 Query: 424 ENALLNLCINARDAMPHGGRLTIETANRWLDD-IGALQRGVPPGQYVSLSVSDTGAGMSP 482 EN ++N INARDAMP GGRLT++ N L+D + Q + PG+YV L +SD GAGMSP Sbjct: 838 ENLIINTAINARDAMPSGGRLTVQIDNVRLEDPVFLSQADLAPGEYVELQISDNGAGMSP 897 Query: 483 EVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCIYLPRHVGE 542 EV RAF+PFFTTK G+GTGLGLSM YGF QS G + I+SE G+G + IY PR + E Sbjct: 898 EVRDRAFEPFFTTKLEGEGTGLGLSMAYGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDE 957 Query: 543 GGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYCVLEAEDGPSALRVV 602 ++ + E + G +TILVV+D+P +++ ++ L LGY VL+A++G AL ++ Sbjct: 958 ----EVRIDEVRDLTVHGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALEIL 1013 Query: 603 EACQEIDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGMQV 662 ++ IDL+ TDV +P + +LA R PD+ +LF +GY + +++ G L+ G+++ Sbjct: 1014 QSGVAIDLVFTDVVMPGSVPVTELAQQARLLVPDIEILFTSGYPRDTIVHEGRLDAGVEL 1073 Query: 663 LTKPFAADVLARRVKELVGE 682 L+KP+ + LA+R+++++ + Sbjct: 1074 LSKPYRINQLAQRIRQMLSQ 1093 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 552 Score = 283 bits (724), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 169/388 (43%), Positives = 237/388 (61%), Gaps = 13/388 (3%) Query: 296 NAEEALRQAQKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGR--IGDIERHLNG 353 +AE+AL QA+KMEA+GQLTGG+AHDFNN+L I+G L+++ + L + + + R + Sbjct: 162 DAEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDMINLALRSDKPDLARVARSADS 221 Query: 354 AQSAVKRAAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGL 413 + A +AA LTQ+LLAF+R+Q L+ + +LN + G +L+ R++G I V+T A GL Sbjct: 222 IRKASGKAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVSRTLGGDITVQTELARGL 281 Query: 414 WHTFVDIGQMENALLNLCINARDAMPHGGRLTIETANRWLDDIG-ALQRGVPPGQYVSLS 472 W+ +D QME ALLN+ INARDAM GR+ I TAN L D A+Q G+ G YVS++ Sbjct: 282 WNCRLDPTQMEVALLNVLINARDAMNGRGRVRIRTANEDLADPDRAVQLGLKEGLYVSIA 341 Query: 473 VSDTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMV 532 V+D G G++P+++ R DPFFTTK G+GTGLGLSMVYGF QSGG+VRI S G V Sbjct: 342 VTDDGPGIAPDILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRITSGAEGGTTV 401 Query: 533 CIYLP---RHVGEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYCV 589 IY P VG G ++ + G + ILVVDD V + +L LGY V Sbjct: 402 TIYFPATQDQVGGG------FEYDNRSQSQGGQEHILVVDDRLEVAELAQTMLESLGYRV 455 Query: 590 LEAEDGPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENA 649 AL+++ + + +DLL TD+ +P MNG LA + P + VL TGYA + Sbjct: 456 SMVNSPAEALQLIRSGRPVDLLFTDLIMPGSMNGVVLAREAKRMLPTIKVLLTTGYASES 515 Query: 650 VLNHGHLERGMQVLTKPFAADVLARRVK 677 + HG + VL KP+ D LAR+++ Sbjct: 516 LERHGA-DGEFPVLDKPYRHDELARKIR 542 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 168/379 (44%), Gaps = 68/379 (17%) Query: 197 VHPDDRELLSARIREALAR---GGAYAHQYRTRRRDGRYYWLEANGRVEMTPDGIPSKFP 253 +HPDD +A+I +LA ++YR R +G Y W+ R+ PDG P + Sbjct: 86 IHPDD----TAQIFSSLAMLFVEDQKIYEYRFRTSNGSYLWMHDTLRLIRDPDGTPQEVI 141 Query: 254 GVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEALRQAQKMEAVGQL 313 G++ DI GR+ +E R R L E L+ A+ L Q++K+ ++GQL Sbjct: 142 GLMTDITGRKEMEDTLQRQAEEQRKLIEQLKM-----------AQAQLMQSEKLASIGQL 190 Query: 314 TGGLAHDFNNILAGISGSLE---------LMKVRLAQGRIG------------------- 345 G+AH+ NN + +S +L L ++L Q G Sbjct: 191 AAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCLQGGALPAAMAQEQLRSFEARA 250 Query: 346 -------DIERHLNGAQSAVKRAAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRS 398 D+ L + ++R + Q L FSR + + DL+R + + Sbjct: 251 DLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESNWQMTDLHRGLDSTLNIANNE 310 Query: 399 VGPAIAVETIAAGGLWHTFVDIGQMENALLNLCINARDAMPHGGRLTIETANRWLDDIGA 458 + +++ G L ++ +NL +NA A+ G +TI TA Sbjct: 311 LKYKVSI-VKQYGELPLVKCLASELNQVFMNLLVNAAQAISERGTVTICTAR-------- 361 Query: 459 LQRGVPPGQYVSLSVSDTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGG 518 G VS+S+SDTG G++PE + R F+PFFTTKP G GTGLGLS+ YG + GG Sbjct: 362 ------AGDKVSVSISDTGHGIAPENLNRIFEPFFTTKPVGSGTGLGLSLSYGIVKKHGG 415 Query: 519 TVRIYSELGQGAMVCIYLP 537 +R+ S G G I LP Sbjct: 416 DIRVSSAPGCGTTFTIELP 434 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,326,316 Number of extensions: 106668 Number of successful extensions: 545 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 545 Number of HSP's successfully gapped: 20 Length of query: 688 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 596 Effective length of database: 1,184,250 Effective search space: 705813000 Effective search space used: 705813000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)