BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0325.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 1074 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 461 e-131 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 444 e-125 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 423 e-119 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 418 e-118 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/549 (99%), Positives = 546/549 (99%) Query: 1 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL Sbjct: 1 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 Query: 61 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA Sbjct: 61 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 Query: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 Query: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540 Query: 541 ASRAPGQHP 549 ASRAP P Sbjct: 541 ASRAPTARP 549 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 461 bits (1187), Expect = e-131, Method: Compositional matrix adjust. Identities = 287/544 (52%), Positives = 373/544 (68%), Gaps = 4/544 (0%) Query: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 ++K++VRL A FA ++ ++ V++ + ++ A D+IVNDRY+KV + D V Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 65 NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124 N + LR AI N +K +++ Q E L ++ R T G + AL +A Sbjct: 64 NTGARSLRN-AIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQA 122 Query: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184 R + + + L+ A ++ K Q+ Y A + Q + + +A Sbjct: 123 RADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERA 182 Query: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244 A + AI + L S AVL + + L+ RSI +PL EAV+VA VAAGDLT +IE S Sbjct: 183 SAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATS 242 Query: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304 +DETG L+ AL+ MNDNL IV+ VR GT++I TAS EIA+GNLDLS+RTEQQAG+LEET Sbjct: 243 KDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEET 302 Query: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364 ASAMEE+TSTVRQNADNARQAN +A +AS++A+QGG +VG VV TM +IN +SRKIVDII Sbjct: 303 ASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDII 362 Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI SV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASV 422 Query: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 +VE GS LV QAGATME+VV+SV+ VTD+VAEI+AAS EQS GIE+IN+A+ QMDE TQ Sbjct: 423 ERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 482 Query: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIP---AAPVRTALAPAAPAPTA 541 QNAALVEQAAAAA+S+QEQ+ RL+ ++ IF+L A P +APV+ ++ A P Sbjct: 483 QNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPVL 542 Query: 542 SRAP 545 +R P Sbjct: 543 ARKP 546 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/512 (53%), Positives = 364/512 (71%), Gaps = 1/512 (0%) Query: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 K++K++VRLA FA ++ ++ +++ +++I+++ IV DRY K+ A ++RD V Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 65 NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124 N + LR A+ N + + +T EAL K+ TA G++ +++ EA Sbjct: 63 NGAARNLRN-ALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEA 121 Query: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184 R A++ + L+K A E + ++ Q+ Y + F Q + ++ + Sbjct: 122 RSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEG 181 Query: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244 AI + L S A+ +I +L+ RSI +PL EAV VA VAAGDLT +I S Sbjct: 182 RDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGATS 241 Query: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304 +DETG L+ AL+ MND+L IVS VR+G+++I TAS EIA+GNLDLS+RTE+QAG+LEET Sbjct: 242 KDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEET 301 Query: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364 ASAMEE+TSTV+QNADNARQAN +A +ASE+A+QGG +VG+VV TM EIN +SRKIVDII Sbjct: 302 ASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDII 361 Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKALI DSV Sbjct: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSV 421 Query: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 +V+ GS LV QAG TM +VV+SVR VTD+VAEISAAS EQS GIE+IN A+TQMD+ TQ Sbjct: 422 SRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQ 481 Query: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 QNAALVE+AAAAA+S+QEQ+ RL+ ++S+FKL Sbjct: 482 QNAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust. Identities = 284/560 (50%), Positives = 371/560 (66%), Gaps = 27/560 (4%) Query: 4 YFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDG 63 +F +L+++ +L F +VA++A + V + +++ +N A +I + W +R Sbjct: 3 WFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTN------WLPSIRTL 56 Query: 64 VNEQIKYLRGIAIDIENRPANE-KRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALD 122 Q+ R + ++++ A + K + ++E ++ L A VT + + + KA+ Sbjct: 57 ARLQLAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIY 116 Query: 123 ---EARIAFDASKAD-FLALVKAGNSTSADEYVLRKITDTQNNYLALAR----AFADSQD 174 E IA S+ D +AL + G A L++ T+ +L + A + + Sbjct: 117 PEVEKLIATFVSEHDKIIALSRQGKDEEARN--LQRGESTKAYRTSLQQIDKLAAVNDKG 174 Query: 175 AQLQAEGAKAV-ADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAA 233 A + + A A+ A + I VT+A A + A++L ++R I +PL EAV VA+ VA Sbjct: 175 ADISNKQADAIYAQARLWIIVTVA---ACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAG 231 Query: 234 GDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSAR 293 GDLTTRIEP +DETGQL+ AL+ MND+L+ IV VR GT++ITTAS EIASGNLDLS+R Sbjct: 232 GDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSR 291 Query: 294 TEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEI 353 TE+QA SLEETASAMEE+TSTV+QNADNARQANQ+AVSASE+A QGG +V +VV TM I Sbjct: 292 TEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSI 351 Query: 354 NQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 413 N SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA Sbjct: 352 NASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAA 411 Query: 414 KEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEIN 473 KEIK LI SV +V+ GS LV +AG TM +VV SVR VTDIV EIS+AS EQS GIE++N Sbjct: 412 KEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVN 471 Query: 474 RAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALA 533 A+ QMDE TQQNAALVE+AAAAA+S+QEQA LTQ++ FKLEQ P P + Sbjct: 472 LAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQ----PDEP--ASRP 525 Query: 534 PAAPAPTASRAPGQHPPGCR 553 P A A A +H P R Sbjct: 526 PVRAASVARTAAVRHAPATR 545 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/532 (49%), Positives = 349/532 (65%), Gaps = 4/532 (0%) Query: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 KNLK+ VRLA F ++ L+AV+ ++ +I A D + K R A + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 65 NEQIKYLRGIAIDIENRPANEKRF-AQLEVAVKQTKEALDKITARQVTAVGQKKAKALDE 123 E +R A+ + A + F Q++ + + ++ A A ++ + + Sbjct: 61 KE--NGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGK 118 Query: 124 ARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAK 183 R A+ A++ + AG+ A E + ++Y +AD Q + A Sbjct: 119 LRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAA 178 Query: 184 AVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPH 243 D + LA ++ L +L+ RSI +PL +AV +AE VAAGDLT+RI+ Sbjct: 179 INRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSS 238 Query: 244 SRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEE 303 SRDETG+L+ AL+ MN NL++IV VR GTE+I TAS EIA+GNLDLSARTE QAGSLEE Sbjct: 239 SRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEE 298 Query: 304 TASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDI 363 TASAME++TSTV+QNADNARQAN++A SAS++A QGG +V +VV TM I+ SS+KI DI Sbjct: 299 TASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADI 358 Query: 364 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADS 423 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI DS Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDS 418 Query: 424 VGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGT 483 V KV+ GS LVA+AG TM++VV SV VT +V EI+ AS EQS GIE++N A+T +DE T Sbjct: 419 VEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETT 478 Query: 484 QQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPA 535 QQNAALVEQAAAAA+SMQ+QA LT ++S+F+LE A + A V+ +P+ Sbjct: 479 QQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDD-AQVLAVAVQRGTSPS 529 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,011,525 Number of extensions: 33109 Number of successful extensions: 493 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 72 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)