BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0311.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 501 e-143 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 285 2e-78 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 280 5e-77 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 261 3e-71 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 260 7e-71 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 501 bits (1291), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/251 (99%), Positives = 250/251 (99%) Query: 1 MTDPIVEVSGLRKSFGTHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60 MT+PIVEVSGLRKSFG HVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG Sbjct: 1 MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60 Query: 61 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK 120 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK Sbjct: 61 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK 120 Query: 121 AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL 180 AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL Sbjct: 121 AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL 180 Query: 181 VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR 240 VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR Sbjct: 181 VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR 240 Query: 241 TRSFLQTMLAR 251 TRSFLQTMLAR Sbjct: 241 TRSFLQTMLAR 251 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 285 bits (730), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/247 (58%), Positives = 182/247 (73%), Gaps = 5/247 (2%) Query: 5 IVEVSGLRKSFGTHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 ++EV + K FG H VLKD+ LSVA +VV +IGPSGSGKST LRC+NGLE E G + + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 G+ V G P+ + LR VGMVFQ FNLFPH TVL+N+T P + G++R A+ Sbjct: 61 DGQRVDRDG---PD--IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARS 115 Query: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGEV 184 +A+ LL+KVGLA + AYP LSGGQ+QRVAIAR+LAM+P+ +LFDEPTSALDPELVGEV Sbjct: 116 EAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 Query: 185 LQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRSF 244 L V+R LAA+GMTMI+VTHEMGFAREVAD V + GSIVE+G + PQ ART+ F Sbjct: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDF 235 Query: 245 LQTMLAR 251 L+ ++ + Sbjct: 236 LRRVIGK 242 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 280 bits (717), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 141/246 (57%), Positives = 183/246 (74%), Gaps = 7/246 (2%) Query: 5 IVEVSGLRKSFGTHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 +++V+ L+K FG +L+ +D + +VV VIGPSGSGKSTFLRCLNGLE+ G + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDI-- 58 Query: 65 CGRPVVEGGRMM-PEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQ 123 +EG ++ P+ L+ LRAE+GMVFQ FNLFPH+TVL+N+ +AP ++ +SR+ A Sbjct: 59 ----FIEGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAV 114 Query: 124 QQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGE 183 A +LL+KVGL K A+P LSGGQ+QRVAIARALAMEP+VMLFDEPTSALDPELVGE Sbjct: 115 LVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGE 174 Query: 184 VLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRS 243 VL V++ LA EGMTM++VTHEMGFAREV+D V+ +D G I+E GPP + P RTR Sbjct: 175 VLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRD 234 Query: 244 FLQTML 249 FL+ +L Sbjct: 235 FLRKVL 240 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 261 bits (668), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/242 (54%), Positives = 168/242 (69%), Gaps = 5/242 (2%) Query: 4 PIVEVSGLRKSFGTHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVK 63 PIVE++ + K FG++ VL + LSV QVV +IG SGSGKST LRC+NGLE +GG++ Sbjct: 2 PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61 Query: 64 VCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQ 123 V G + + E LR +VGMVFQ +NLFPHLTV +NI L+P ++ + + A+ Sbjct: 62 VAGHKLTHKHEHLIE-----LRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETAR 116 Query: 124 QQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGE 183 + A+++L++VGL HK AYP LSGGQ+QRVAIAR+LAMEPQVMLFDE TSALDPEL E Sbjct: 117 ETAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAE 176 Query: 184 VLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRS 243 VL+V+ LA GMTM++VTHEM FAR VAD+ V M G + EA P F PQ R Sbjct: 177 VLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQ 236 Query: 244 FL 245 F+ Sbjct: 237 FI 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 260 bits (665), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 132/245 (53%), Positives = 173/245 (70%), Gaps = 4/245 (1%) Query: 5 IVEVSGLRKSFGTHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 IV++ L KSFG++ VL + L V Q+V +IG SGSGKST LRCLNGLEK + G ++V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 CG + ++ L LR +VG+VFQS+NLFPHLTV NITLA T ++ MS + A+ Sbjct: 64 CGHDIHHPDKLN----LRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGEV 184 A ++L+ VGL +K AYP LSGGQ QRVAIAR+LAM P++MLFDE TSALDPEL EV Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 185 LQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRSF 244 L+V+ LA GMTM++VTHEM FAR++ADV+V M G + E GPP +F+ P+ A + F Sbjct: 180 LKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKF 239 Query: 245 LQTML 249 + + L Sbjct: 240 VSSDL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,943 Number of extensions: 31453 Number of successful extensions: 595 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 152 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)