BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0302.p (312 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311595|ref|YP_003775687.1| two component response regulato... 627 0.0 gi|300310564|ref|YP_003774656.1| regulator of the two-component ... 226 2e-60 gi|300312232|ref|YP_003776324.1| signal transduction protein [He... 75 7e-15 gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626... 72 5e-14 >gi|300311595|ref|YP_003775687.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 627 bits (1617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 309/310 (99%) Query: 3 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 62 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI Sbjct: 1 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60 Query: 63 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA 122 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA Sbjct: 61 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA 120 Query: 123 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRAQER 182 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLR QER Sbjct: 121 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRVQER 180 Query: 183 ESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVAD 242 ESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVAD Sbjct: 181 ESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVAD 240 Query: 243 VCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVLREIGP 302 VCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVLREIGP Sbjct: 241 VCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVLREIGP 300 Query: 303 ELAAAAEQTA 312 ELAAAAEQTA Sbjct: 301 ELAAAAEQTA 310 >gi|300310564|ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 226 bits (575), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/241 (46%), Positives = 159/241 (65%) Query: 3 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 62 M T+++P F +++ ++ LP+P GVRL IM++C Q++ + EL+ VQ DP L+GR+I+I Sbjct: 1 MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60 Query: 63 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA 122 N+ N + R +ASV+++ LL+VGL AVRQ+ALA+SL E+ CA F AFW+ S A Sbjct: 61 VNVLNAQRVRPIASVSMDSLLLVGLQAVRQLALALSLAETRAPASCANFSLPAFWAHSFA 120 Query: 123 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRAQER 182 MAC+ QA+ L+VAP EMFT GLLA IG+L LASA+P Y LL RA E+ Sbjct: 121 MACSAQAVTSQLRVAPLGEMFTTGLLANIGKLTLASAQPTGYSALLTRALDAPARRAMEQ 180 Query: 183 ESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVAD 242 FGF+HL +AAA+MQDW P +FC+AVLH+ P G RQ ++ L LA +A+ Sbjct: 181 SLFGFNHLNIAAALMQDWKIPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLAQAMAE 240 Query: 243 V 243 + Sbjct: 241 L 241 >gi|300312232|ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 5/197 (2%) Query: 15 MQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMV 74 Q LP+ V ++++ E +++ E+ ++ D VL+ +++++AN + R + Sbjct: 7 FQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTI 66 Query: 75 ASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQALGDLL 134 +V+ + +LM+G VR + ++ + S ++ D FW S A + L Sbjct: 67 GTVD-DAVLMLGFMTVRTLVVSTGMAGSFKK--LPGVDLKLFWRYSLDTALVAKWLAKRG 123 Query: 135 QVAPPAEMFTIGLLAGIGQLGLASARPKRYGEL-LLAGAKDAQLRAQERESFGFDHLALA 193 ++ FT+GL+ IGQL + + P++ ++ +AG DA+ ER+SFG+D + Sbjct: 124 KLNSDF-AFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVG 182 Query: 194 AAMMQDWHFPRIFCEAV 210 A + + W FP F + + Sbjct: 183 AELARRWRFPDEFAKVI 199 >gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] Length = 290 Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 22/236 (9%) Query: 21 LPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMVASVNVE 80 LP V ++M EDI+ E+ Q+ DP L+ +++++AN + R + +V+ + Sbjct: 13 LPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFFHASRTIGTVD-D 71 Query: 81 LLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQAL---GDLLQVA 137 L ++G VR + L + + + + D FW + A A + L ++ Sbjct: 72 ALRILGFIMVRNLVLGNGMVAAFK--NTRGMDLHQFWRHTLYTAVAARWLAMHAGMVGED 129 Query: 138 PPAEMFTIGLLAGIGQLGL------ASARPKRYGELLLAGAKDAQLRAQERESFGFDHLA 191 +FT+G++ GIGQL L A A R+ +L D+ +E+E++GF + Sbjct: 130 NGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVL-----DSDRAEREKEAWGFHYAD 184 Query: 192 LAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVADVCTAS 247 ++A + WHFP A+ DP +G R + + L G A V S Sbjct: 185 VSAELAAIWHFPDALVTALRSVPDPLGAG-----RFDRAAAWVHLGGWAARVAILS 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 855,793 Number of extensions: 30397 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 4 Length of query: 312 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 227 Effective length of database: 1,217,395 Effective search space: 276348665 Effective search space used: 276348665 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)