BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0299.p
         (855 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfam...  1686   0.0  

>gi|300311592|ref|YP_003775684.1| ATP-dependent helicase superfamily
           II protein [Herbaspirillum seropedicae SmR1]
          Length = 855

 Score = 1686 bits (4365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/855 (99%), Positives = 850/855 (99%)

Query: 1   MPRNPRSSRASASACAGSAHAAQSALTAAEAWFQRRGWQVFDFQREVWQAAQQGRSGLLH 60
           MPRNPRSSRASASACAGSAHAAQSALTAAE WFQRRGWQVFDFQREVWQAAQQGRSGLLH
Sbjct: 1   MPRNPRSSRASASACAGSAHAAQSALTAAETWFQRRGWQVFDFQREVWQAAQQGRSGLLH 60

Query: 61  ASTGSGKTYAVWFGALLHAQPSLGQPTQGATTNGLRVLWITPMRALAADTLRALQEPLPE 120
           ASTGSGKTYAVWFGALLHAQPSLGQPTQGATTNGLRVLWITPMRALAADTLRALQEPLPE
Sbjct: 61  ASTGSGKTYAVWFGALLHAQPSLGQPTQGATTNGLRVLWITPMRALAADTLRALQEPLPE 120

Query: 121 LLPHWQAGMRTGDTGSSERARQMKALPQALVTTPESLSLLLSQADARQRFGKLDAVIVDE 180
           LLPHWQAGMRTGDTGSSERARQMKALPQ LVTTPESLSLLLSQADARQRFGKLDAVIVDE
Sbjct: 121 LLPHWQAGMRTGDTGSSERARQMKALPQVLVTTPESLSLLLSQADARQRFGKLDAVIVDE 180

Query: 181 WHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQSLQALLGPDQAAQGVLVRG 240
           WHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQSLQALLGPDQAAQGVLVRG
Sbjct: 181 WHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQSLQALLGPDQAAQGVLVRG 240

Query: 241 QQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNSTLVFTNTRSQAELWYQNL 300
           QQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNSTLVFTNTRSQAELWYQNL
Sbjct: 241 QQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNSTLVFTNTRSQAELWYQNL 300

Query: 301 LEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG 360
           LEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG
Sbjct: 301 LEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG 360

Query: 361 SPRGVARLLGGAGRSGHAPGRVSRATLVPTNSLELVEAAAAQDAVAAGQVEQRPVPEAPL 420
           SPRGVARLL  AGRSGHAPGRVSRATLVPTNSLELVEAAAAQDAVAAGQVEQRPVPEAPL
Sbjct: 361 SPRGVARLLQRAGRSGHAPGRVSRATLVPTNSLELVEAAAAQDAVAAGQVEQRPVPEAPL 420

Query: 421 DVLVQHLVTIALGGGFRPDELFDEVRRAWSYRALREDQWQWALDFVVRGGQSLTAYPEYQ 480
           DVLVQHLVTIALGGGFRPDELFDEVR+AWSYRALREDQWQWALDFVVRGGQSLTAYPEYQ
Sbjct: 421 DVLVQHLVTIALGGGFRPDELFDEVRQAWSYRALREDQWQWALDFVVRGGQSLTAYPEYQ 480

Query: 481 RVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGGRIGTIEEGFIARLRPGDR 540
           RVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGGRIGTIEEGFIARLRPGDR
Sbjct: 481 RVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGGRIGTIEEGFIARLRPGDR 540

Query: 541 FLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSSTLAHAVLDRLEQAAQARF 600
           FLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSSTLAHAVLDRLEQAAQARF
Sbjct: 541 FLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSSTLAHAVLDRLEQAAQARF 600

Query: 601 DGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW 660
           DGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW
Sbjct: 601 DGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW 660

Query: 661 RLARQQAASFSIAVNDYGFELLGAQQAPLEQLAAHQAQTLFSDHDLLQDVLSSLNATELS 720
           RLARQQAASFSIAVNDYGFELLGAQQAPLEQLAAHQAQTLFSDHDLLQDVLSSLNATELS
Sbjct: 661 RLARQQAASFSIAVNDYGFELLGAQQAPLEQLAAHQAQTLFSDHDLLQDVLSSLNATELS 720

Query: 721 QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDANNLLLTQAQREVLEQE 780
           QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDANNLLLTQAQREVLEQE
Sbjct: 721 QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDANNLLLTQAQREVLEQE 780

Query: 781 LELERLRSTLAELRARTLTLVRLQRPTPFALPLMVERFREKLSTEKLADRVARMLRELES 840
           LEL RLRSTLAELRARTLTLVRLQRPTPFALPLMVERFREKLSTEKLADRVARMLRELES
Sbjct: 781 LELARLRSTLAELRARTLTLVRLQRPTPFALPLMVERFREKLSTEKLADRVARMLRELES 840

Query: 841 AADASAGKTAARRRP 855
           AADASAGKTAARRRP
Sbjct: 841 AADASAGKTAARRRP 855


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,500,558
Number of extensions: 106164
Number of successful extensions: 389
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 1
Length of query: 855
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 762
Effective length of database: 1,179,515
Effective search space: 898790430
Effective search space used: 898790430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)