BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0292.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   439   e-124
gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   200   7e-53
gi|300310491|ref|YP_003774583.1| transmembrane protein [Herbaspi...    58   6e-10

>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 60
           MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF
Sbjct: 1   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 60

Query: 61  CATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEKH 120
           CATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEKH
Sbjct: 61  CATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEKH 120

Query: 121 GGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 180
           GGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVV
Sbjct: 121 GGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 180

Query: 181 QQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRKVSNA 220
           QQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRKVSNA
Sbjct: 181 QQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRKVSNA 220


>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  200 bits (509), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 146/214 (68%), Gaps = 8/214 (3%)

Query: 4   LQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAT 63
           L L+D +VH+D++L  L   YG  ++ +LFLI+FCETGLVV P LPGDSLLF+ G   AT
Sbjct: 5   LFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGALAAT 64

Query: 64  GAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTH-NYRWLNPEALRKTHAFYEKHGG 122
           GA DI L++  L+VAA+ G++ NY IG  +G +V+   N R    E L KTHAF+EKHGG
Sbjct: 65  GAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFEKHGG 124

Query: 123 KTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQ 182
           K I+IARF PIVRTFAPF+AGV AM++ RF L+NV+G   WV      GY FGN+P+V++
Sbjct: 125 KAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMPIVKK 184

Query: 183 NLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRK 216
           NL+ L++  ++ ++ P        I   +R KR+
Sbjct: 185 NLSLLIVAIVILSILP-------GIIEYIRHKRR 211


>gi|300310491|ref|YP_003774583.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 58.2 bits (139), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 17/208 (8%)

Query: 20  LIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCATGAMDIWLLMTLLVVAA 79
           LIEQYG LI   +F+ V  E     +P  P    L + G   A G     +L+ + V AA
Sbjct: 7   LIEQYGLLI---VFVNVLVEQLGAPVPAYP---TLILTGALSAAGRYSPAVLLLVAVCAA 60

Query: 80  VAGNTLNYWIGGWVGQRVYTHNYR-WLNPEA-LRKTHAFYEKHGGKTIVIARFTPIVRTF 137
           +  + + Y  G   G+++ +   R  L+P++ +R+T + Y + G +++++A+F P   + 
Sbjct: 61  LLADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120

Query: 138 APFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQNLNTLVLIG-----I 192
           A  ++G        F L++  G+ LW    + LG LF +   V   LN L  +G     +
Sbjct: 121 ASALSGTMGTRRRSFLLWDAAGSALWAGLGIFLGSLFSS--AVDDLLNVLAELGHYGMLM 178

Query: 193 VAAVFPIVLGGLWQIWRKLRGKRKVSNA 220
           +A      +   W  W++ R ++ +  A
Sbjct: 179 IAVALAAFVANKW--WQRRRFRKSLEMA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.146    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,161
Number of extensions: 23567
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)