BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0289.p (633 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 1275 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 369 e-103 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 367 e-102 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 365 e-102 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 364 e-102 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 633/633 (100%), Positives = 633/633 (100%) Query: 1 MTVALVGIVFVIALLLITYSASRMIEQRSVEQMRNDTRGIANMVGLFDRSVNSQVDRFST 60 MTVALVGIVFVIALLLITYSASRMIEQRSVEQMRNDTRGIANMVGLFDRSVNSQVDRFST Sbjct: 25 MTVALVGIVFVIALLLITYSASRMIEQRSVEQMRNDTRGIANMVGLFDRSVNSQVDRFST 84 Query: 61 MFDSEFGKLSLDETRTVQIGERATPVLQNDGHELNLDFSIPDRFTAKTGVTATIFAKTGE 120 MFDSEFGKLSLDETRTVQIGERATPVLQNDGHELNLDFSIPDRFTAKTGVTATIFAKTGE Sbjct: 85 MFDSEFGKLSLDETRTVQIGERATPVLQNDGHELNLDFSIPDRFTAKTGVTATIFAKTGE 144 Query: 121 DFVRISTSVKKENGERAIGTLLDRSHPGYAALKSDKAYSGLATLFGKQYITKYVPVKNNA 180 DFVRISTSVKKENGERAIGTLLDRSHPGYAALKSDKAYSGLATLFGKQYITKYVPVKNNA Sbjct: 145 DFVRISTSVKKENGERAIGTLLDRSHPGYAALKSDKAYSGLATLFGKQYITKYVPVKNNA 204 Query: 181 GQIIAALYVGIDISSDIKALKDQIKALKIGDTGNFFALNAREGKDLGVMIAGAAREGKEE 240 GQIIAALYVGIDISSDIKALKDQIKALKIGDTGNFFALNAREGKDLGVMIAGAAREGKEE Sbjct: 205 GQIIAALYVGIDISSDIKALKDQIKALKIGDTGNFFALNAREGKDLGVMIAGAAREGKEE 264 Query: 241 GSSLLELKDAAGDTYIKTMLQQKDGSLPYTAADGRKKILAFTYYPGWHWVIAGEAAVDEI 300 GSSLLELKDAAGDTYIKTMLQQKDGSLPYTAADGRKKILAFTYYPGWHWVIAGEAAVDEI Sbjct: 265 GSSLLELKDAAGDTYIKTMLQQKDGSLPYTAADGRKKILAFTYYPGWHWVIAGEAAVDEI 324 Query: 301 TREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVH 360 TREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVH Sbjct: 325 TREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVH 384 Query: 361 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEE 420 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEE Sbjct: 385 SSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEE 444 Query: 421 TASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDI 480 TASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDI Sbjct: 445 TASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDI 504 Query: 481 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS 540 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS Sbjct: 505 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDAS 564 Query: 541 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST 600 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST Sbjct: 565 VQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDEST 624 Query: 601 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI 633 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI Sbjct: 625 QQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI 657 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust. Identities = 223/400 (55%), Positives = 287/400 (71%), Gaps = 26/400 (6%) Query: 243 SLLELKDAAGD---------TYIKTMLQQKDGSLPYTAADGRKKILAFTYYPGWHWVIAG 293 S+ ++K A D T +K M DG L Y AD +K+++ T Sbjct: 129 SIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRY--ADFQKQVIDQTAAA-------- 178 Query: 294 EAAVDEITREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSRPLDAVCQAADRIASGDL 353 I R+ S R++ + LG + + VL A L ++ R ++RPL+ A+ +A+GDL Sbjct: 179 ------INRDYRSGRSMLLALGAIEI-VLGAALAWLLTRSITRPLNQAVTIAETVAAGDL 231 Query: 354 TTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQ 413 T+R+ S DE G+L+ A ++ L ++V VR GTE INTA+ EIA+GNL+LS RTE Sbjct: 232 TSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEA 291 Query: 414 QAGALEETASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSS 473 QAG+LEETASAME+LTSTVKQNA NA QA+EL+++AS+VA+ GG VV QVV TM AI++S Sbjct: 292 QAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHAS 351 Query: 474 SQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEI 533 SQ+I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEI Sbjct: 352 SQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 411 Query: 534 KELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAI 593 K+LID SV+ V G +LV +AG+TM +VV SV RV+ V+ EIT AS+EQS+GI+Q+N AI Sbjct: 412 KQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAI 471 Query: 594 AQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI 633 +DE+TQQNAALVEQAAAAA+S+Q QA L AVS FR+ Sbjct: 472 THIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/325 (64%), Positives = 257/325 (79%), Gaps = 1/325 (0%) Query: 310 LYIGLGLLFLAVLAAI-LTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVHSSDEIGRL 368 + + L AVLAAI L ++ R + +PL + A+ +A+GDLTTR+ HS DE G+L Sbjct: 192 IEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQL 251 Query: 369 MGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEEL 428 M A ++ L E+VS VR GTE I TA+ EIASGNL+LS RTEQQAG+LEETASAMEE+ Sbjct: 252 MQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEM 311 Query: 429 TSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIA 488 TSTV+QNA NA QA++++ +ASE+A GG++VG+VV TMD IN SS++IVDII VIDGIA Sbjct: 312 TSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIA 371 Query: 489 FQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGG 548 FQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK LI SV V GG Sbjct: 372 FQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGS 431 Query: 549 QLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVE 608 LV QAG TM VVSSV+ V+ +++EI+ AS EQS GI++INRA+ QMDE TQQNAALVE Sbjct: 432 ALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVE 491 Query: 609 QAAAAAQSLQQQAERLAAAVSTFRI 633 QAAAAA+S+Q+QA RL ++S F++ Sbjct: 492 QAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/343 (62%), Positives = 269/343 (78%), Gaps = 2/343 (0%) Query: 292 AGEAAVDEITREVSSMRNLYIGLGLLFLAVLAAI-LTVMVNRMVSRPLDAVCQAADRIAS 350 AG D++ +V L+I +GLL V+ A+ L VMV R VSRPL+ A+R+A Sbjct: 173 AGSKRSDDMAEQVYRSATLWI-IGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQ 231 Query: 351 GDLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVR 410 GDLT + S+DE G LM + ++ L ++V VR GT+ I TA+ EIA+GNL+LS R Sbjct: 232 GDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSR 291 Query: 411 TEQQAGALEETASAMEELTSTVKQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAI 470 TE+QAG+LEETASAMEELT+TVKQNA NA QA++L+++AS++A+ GG VVGQVVQTM+ I Sbjct: 292 TEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGI 351 Query: 471 NSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAA 530 SS RI DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA Sbjct: 352 TESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 411 Query: 531 KEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQIN 590 KEIK+LID SV+ V G QLV +AG TM++VV+SV+RV+ V++EI+ AS EQS GI++IN Sbjct: 412 KEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEIN 471 Query: 591 RAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFRI 633 RAI QMDE TQQNAALVE+AAAAAQSLQ QA RL+ VS F++ Sbjct: 472 RAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/321 (65%), Positives = 254/321 (79%), Gaps = 1/321 (0%) Query: 314 LGLLFLAVL-AAILTVMVNRMVSRPLDAVCQAADRIASGDLTTRLHVHSSDEIGRLMGAF 372 +GLL VL A++L +V VSRPL Q A R+A GDLT R+ DE G LM A Sbjct: 194 VGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPAGRDETGALMEAL 253 Query: 373 NGISMGLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTV 432 ++ L ++VS VR GT+ I TA+ EIA GNL+LS RTEQQAG+LEETASAMEELTSTV Sbjct: 254 RAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTV 313 Query: 433 KQNAANAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTN 492 QNA NA QA++L++ AS++AS GGEVVGQVVQTM+ I SS+RI DIISVIDGIAFQTN Sbjct: 314 TQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTN 373 Query: 493 ILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVT 552 ILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIKELID SVQ V+ G LV Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVE 433 Query: 553 QAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAA 612 +AG+TM +VV+SV+RV+ V++EI+ A++EQS GI+++N AI QMDE+TQQNAALVEQAAA Sbjct: 434 RAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAA 493 Query: 613 AAQSLQQQAERLAAAVSTFRI 633 AA SL+ QA LAA V F++ Sbjct: 494 AADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,466,336 Number of extensions: 53313 Number of successful extensions: 650 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 74 Length of query: 633 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 542 Effective length of database: 1,188,985 Effective search space: 644429870 Effective search space used: 644429870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)