BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0288.p
         (641 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein [He...  1275   0.0  

>gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/627 (99%), Positives = 626/627 (99%)

Query: 15  MPSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAI 74
           MPSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAI
Sbjct: 1   MPSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAI 60

Query: 75  TDNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTAD 134
           TDNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTAD
Sbjct: 61  TDNGRGIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTAD 120

Query: 135 APHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIA 194
           APHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIA
Sbjct: 121 APHAWEITGSQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIA 180

Query: 195 LARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLP 254
           LARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLP
Sbjct: 181 LARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGLP 240

Query: 255 TASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVH 314
           TASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVH
Sbjct: 241 TASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNVH 300

Query: 315 PSKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAANAPLP 374
           PSKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAANAPLP
Sbjct: 301 PSKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAANAPLP 360

Query: 375 WIREQQQQSFSAQFAEAPRPFSFGGNSGFGVRQNTEAYGSMFRSAPTSGEPDGSAPAAYG 434
           WI EQQQQSFSAQFAEAPRPFSFGGNSGFGVRQNTEAYGSMFRSAPTSGEPDGSAPAAYG
Sbjct: 361 WIGEQQQQSFSAQFAEAPRPFSFGGNSGFGVRQNTEAYGSMFRSAPTSGEPDGSAPAAYG 420

Query: 435 ATPAAAPAALPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLKTALDG 494
           ATPAAAPAALPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLKTALDG
Sbjct: 421 ATPAAAPAALPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLKTALDG 480

Query: 495 NEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALLKNADA 554
           NEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALLKNADA
Sbjct: 481 NEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALLKNADA 540

Query: 555 QTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQMEATER 614
           QTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQMEATER
Sbjct: 541 QTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQMEATER 600

Query: 615 SDQCNHGRPTWTQMGLSDLDKLFLRGQ 641
           SDQCNHGRPTWTQMGLSDLDKLFLRGQ
Sbjct: 601 SDQCNHGRPTWTQMGLSDLDKLFLRGQ 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,873,840
Number of extensions: 75895
Number of successful extensions: 292
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 550
Effective length of database: 1,188,985
Effective search space: 653941750
Effective search space used: 653941750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)