BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0286.p
         (720 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...  1486   0.0  

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score = 1486 bits (3848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/720 (98%), Positives = 715/720 (99%)

Query: 1   VSMLYTGRPVPIDGHRKFSAKEALQRAKAMRCLRARGQTECKGQLFTGLFFDGTGNNDKW 60
           +SMLYTGRPVPIDGHRKFSAKEALQRAKAMRCLRARGQTECKGQLFTGLFFDGTGNNDKW
Sbjct: 1   MSMLYTGRPVPIDGHRKFSAKEALQRAKAMRCLRARGQTECKGQLFTGLFFDGTGNNDKW 60

Query: 61  VEDGQTKNQRQRNKHSNVARLFDAYIDDPDNGFFRVYMQGVGTPFAEIGDTFKLGTDIGG 120
           VEDGQTKNQRQRNKHSNVARLFDAYIDDPDNGFFRVYMQGVGTPFAEIGDTFKLGTDIGG
Sbjct: 61  VEDGQTKNQRQRNKHSNVARLFDAYIDDPDNGFFRVYMQGVGTPFAEIGDTFKLGTDIGG 120

Query: 121 SGFGYMGADRINWGITSLLNAVYSYATGGSLFSGNEQRDLVNLMSMQMLQNGNVNAMPPD 180
           SGFGYMGADRINWGITSLLNAVYSYATGGSLFSGNEQRDLVNLMSMQMLQNGNVNAMPPD
Sbjct: 121 SGFGYMGADRINWGITSLLNAVYSYATGGSLFSGNEQRDLVNLMSMQMLQNGNVNAMPPD 180

Query: 181 WQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQRKVVQINVSVFGFSRGAAEA 240
           WQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQRKVVQINVSVFGFSRGAAEA
Sbjct: 181 WQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQRKVVQINVSVFGFSRGAAEA 240

Query: 241 RACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTVAAVGIGDVTPVTFGHMAWADKTQS 300
           RACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTVAAVGIGDVTPVTFGHMAWADKTQS
Sbjct: 241 RACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTVAAVGIGDVTPVTFGHMAWADKTQS 300

Query: 301 VPPAVEQCAHFVALHEQRASFPLESSTGWTNVGYPGMHSDIGGGYFPGEQGKSMPSWGKS 360
           VPPAVEQCAHFVALHEQRASFPLESSTGWTNVGYPGMHSDIGGGYFPGEQGKSMPSWGKS
Sbjct: 301 VPPAVEQCAHFVALHEQRASFPLESSTGWTNVGYPGMHSDIGGGYFPGEQGKSMPSWGKS 360

Query: 361 PHLSQIPLIDMHFTALKAGVPLLTTGEISGRPALSDSYATDPRLIKSYNDWLATNGIKAG 420
           PHLSQIPLIDMHFTALKAGVPL TTGEI+  P+LS SYATDPRLIKSYNDWLATNGIKAG
Sbjct: 361 PHLSQIPLIDMHFTALKAGVPLWTTGEINADPSLSASYATDPRLIKSYNDWLATNGIKAG 420

Query: 421 SIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADVELGKMIRDWR 480
           SIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADVELGKMIRDWR
Sbjct: 421 SIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADVELGKMIRDWR 480

Query: 481 ERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPSNDRLTAQEKKFYDIMCSDPMPPAACVT 540
           ERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPS DRLTAQEKKFYDIMCSDPMPPAACVT
Sbjct: 481 ERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPSKDRLTAQEKKFYDIMCSDPMPPAACVT 540

Query: 541 LFEDYVHDSRAGFRVMGKHEPIFLTGGYARFRHVFLQGEGDSATRKITELVERHVGDRAA 600
           LFEDYVHDSRAGFRVMGKHEPIFLTGGYARFRHVFLQGEGDSATRKITELVERHVGDRAA
Sbjct: 541 LFEDYVHDSRAGFRVMGKHEPIFLTGGYARFRHVFLQGEGDSATRKITELVERHVGDRAA 600

Query: 601 DMAEDARDIKDYTVRTYDRARARIVSGYHAVEDAAVRAKREVEAKALAAKREIEAQAEAA 660
           DMAEDARDIKDYTVRTYDRARARIVSGYHAVEDAAVRAKREVEAKALAAKREIEAQAEAA
Sbjct: 601 DMAEDARDIKDYTVRTYDRARARIVSGYHAVEDAAVRAKREVEAKALAAKREIEAQAEAA 660

Query: 661 RRQVQATAAAAKRQAVVLKDKTVAEIKREADEAQRIYDAAQKQVIRKYQQMEAFWHQHIH 720
           RRQVQATAAAAKRQAVVLKDKTVAEIKREADEAQRIYDAAQKQVIRKYQQMEAFWHQHIH
Sbjct: 661 RRQVQATAAAAKRQAVVLKDKTVAEIKREADEAQRIYDAAQKQVIRKYQQMEAFWHQHIH 720


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,235,321
Number of extensions: 96298
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 628
Effective length of database: 1,184,250
Effective search space: 743709000
Effective search space used: 743709000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)