BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0285.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310102|ref|YP_003774194.1| hypothetical protein Hsero_0767...   286   5e-79
gi|300310100|ref|YP_003774192.1| hypothetical protein Hsero_0765...   135   1e-33

>gi|300310102|ref|YP_003774194.1| hypothetical protein Hsero_0767
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  286 bits (732), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 146/150 (97%), Positives = 149/150 (99%)

Query: 1   VALAMLAIVSGCSNAEAPAARMTLNLVPYNHMTDGIANFDVQIKGGSKSGGGFLDAGSGG 60
           VALAMLAIVSGCSNAEAPAARMTLNLVPYNHMTDGIANFDVQ+KGGSKSGGG+L AGSGG
Sbjct: 16  VALAMLAIVSGCSNAEAPAARMTLNLVPYNHMTDGIANFDVQVKGGSKSGGGYLHAGSGG 75

Query: 61  GSMICCVSIPEKWQPGLTAKVTAEVYRNSGEKYDIAKEVPIPEYTREQAGHLSVHFLRDG 120
           GSMICCVSIPEKWQPGLTAKVTAEVYR+SGEKYDIAKEVPIPEYTREQAGHLSVHFLRDG
Sbjct: 76  GSMICCVSIPEKWQPGLTAKVTAEVYRSSGEKYDIAKEVPIPEYTREQAGHLSVHFLRDG 135

Query: 121 EVKIFVTRYALWHPDYPLKGREAELKPAAR 150
           EVKIFVTRYALWHPDYPLKGREAELKPAAR
Sbjct: 136 EVKIFVTRYALWHPDYPLKGREAELKPAAR 165


>gi|300310100|ref|YP_003774192.1| hypothetical protein Hsero_0765
           [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  135 bits (341), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 3   LAMLAIVSGCSNAEAPAARMTLNLVPYNHMTDGIANFDVQIKGGSKSGGGFLDAGSGGGS 62
           L +LA++ GC +AE+     T++   YNH    I +F+ Q KGG ++ GGF+  G GGG 
Sbjct: 15  LLLLAMLIGCKDAESRGENYTMDFGAYNHTDHSIDDFEFQFKGGQRAAGGFVGKGEGGGD 74

Query: 63  MICCVSIPEKWQPGLTAKVTAEVYRNSGEKYDIAKEVPIPEYTREQAGHLSVHFLRDGEV 122
            ICC S+P +W P LT +V A     +G    I++EVP+P Y  + AGHL +HFLR+GEV
Sbjct: 75  -ICCASVPMQWTPTLTVQVRASWKDGAGVVQAISREVPLPRYASKDAGHLDIHFLRNGEV 133

Query: 123 KIFVTRYALWHPDYPLKGREAELK 146
           K+FVT  A WHPDYPL+G++ ELK
Sbjct: 134 KVFVTSLATWHPDYPLQGKDVELK 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 432,611
Number of extensions: 14424
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)