BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0284.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...   301   1e-83
gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...   117   5e-28

>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  301 bits (771), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/147 (98%), Positives = 146/147 (99%)

Query: 1   MSHEHWMRRTALLQAVLAMGLALLLCLSSFSARAQTNPDLKALVDHLKFVIPDETALVDP 60
           MSHEHWMRRTALLQAVLAMGLALLLCLS+FSARAQTNPDLKALVDHLKFVIPDETALVDP
Sbjct: 18  MSHEHWMRRTALLQAVLAMGLALLLCLSTFSARAQTNPDLKALVDHLKFVIPDETALVDP 77

Query: 61  QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS 120
           QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS
Sbjct: 78  QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS 137

Query: 121 DAMIGLPQSVYDSGTPLWDNSTYAKGR 147
           DAMIGLPQSVYDSGTPLWDNS YAKGR
Sbjct: 138 DAMIGLPQSVYDSGTPLWDNSAYAKGR 164


>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  117 bits (292), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%)

Query: 39  DLKALVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGK 98
           DL  LV+HLKFVIPDET  + P+ L  FVA+YQ+ A AAGL DIDRQ  YVL+ALYTSG+
Sbjct: 204 DLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGR 263

Query: 99  GVERPEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDN 140
           G   P  + +M  PPAS D + +A+  +P+ V+++G PLW+ 
Sbjct: 264 GTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQ 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 410,018
Number of extensions: 14895
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)