BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0283.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310100|ref|YP_003774192.1| hypothetical protein Hsero_0765...   310   3e-86
gi|300310102|ref|YP_003774194.1| hypothetical protein Hsero_0767...   138   2e-34

>gi|300310100|ref|YP_003774192.1| hypothetical protein Hsero_0765
           [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  310 bits (795), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   LLLLAMLIGCKDAESRGENYTMDFGAYNHTDHSIDDFEFQFKGGQRAAGGFVGKGEGGGD 60
           LLLLAMLIGCKDAESRGENYTMDFGAYNHTDHSIDDFEFQFKGGQRAAGGFVGKGEGGGD
Sbjct: 15  LLLLAMLIGCKDAESRGENYTMDFGAYNHTDHSIDDFEFQFKGGQRAAGGFVGKGEGGGD 74

Query: 61  ICCASVPMQWTPTLTVQVRASWKDGAGVVQAISREVPLPRYASKDAGHLDIHFLRNGEVK 120
           ICCASVPMQWTPTLTVQVRASWKDGAGVVQAISREVPLPRYASKDAGHLDIHFLRNGEVK
Sbjct: 75  ICCASVPMQWTPTLTVQVRASWKDGAGVVQAISREVPLPRYASKDAGHLDIHFLRNGEVK 134

Query: 121 VFVTSLATWHPDYPLQGKDVELKSVLH 147
           VFVTSLATWHPDYPLQGKDVELKSVLH
Sbjct: 135 VFVTSLATWHPDYPLQGKDVELKSVLH 161


>gi|300310102|ref|YP_003774194.1| hypothetical protein Hsero_0767
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  138 bits (348), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 1   LLLLAMLIGCKDAESRGENYTMDFGAYNHTDHSIDDFEFQFKGGQRAAGGFVGKGEGGGD 60
           L +LA++ GC +AE+     T++   YNH    I +F+ Q KGG ++ GG++  G GGG 
Sbjct: 18  LAMLAIVSGCSNAEAPAARMTLNLVPYNHMTDGIANFDVQVKGGSKSGGGYLHAGSGGGS 77

Query: 61  -ICCASVPMQWTPTLTVQVRASWKDGAGVVQAISREVPLPRYASKDAGHLDIHFLRNGEV 119
            ICC S+P +W P LT +V A     +G    I++EVP+P Y  + AGHL +HFLR+GEV
Sbjct: 78  MICCVSIPEKWQPGLTAKVTAEVYRSSGEKYDIAKEVPIPEYTREQAGHLSVHFLRDGEV 137

Query: 120 KVFVTSLATWHPDYPLQGKDVELK 143
           K+FVT  A WHPDYPL+G++ ELK
Sbjct: 138 KIFVTRYALWHPDYPLKGREAELK 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 448,774
Number of extensions: 16142
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)