BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0282.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...   614   e-177
gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...   117   8e-28

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  614 bits (1583), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 305/312 (97%), Positives = 305/312 (97%)

Query: 1   MSTDQGDPLGLQAWALECTDRRHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEAL 60
           MS DQGDPLGLQAWALEC DR HGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEAL
Sbjct: 1   MSADQGDPLGLQAWALECADRGHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEAL 60

Query: 61  PEIAPLLIGLSGLDAPRRERLASWISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLS 120
           PEIAPLLI LSGLDAPRRERLASWISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLS
Sbjct: 61  PEIAPLLISLSGLDAPRRERLASWISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLS 120

Query: 121 DGQAMMMRWYDTRILPIWLQALTPEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSA 180
           DGQAMMMRWYDTRILPIW QALTPEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSA
Sbjct: 121 DGQAMMMRWYDTRILPIWAQALTPEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSA 180

Query: 181 PPPLDQPLVTLDDQQFGLLVDAGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAV 240
           PPPLDQPLVTLDDQQFGLLVDAGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAV
Sbjct: 181 PPPLDQPLVTLDDQQFGLLVDAGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAV 240

Query: 241 AAGLDDIDRQAQYVLLALYTSGRGTAHPRMQALMADPPASLDAYYEAIQAMPEEVWEAGA 300
           AAGLDDIDRQAQYVLLALYTSGRGTAHP MQALMADPPASLDAYYEAIQAMPEEVWEAGA
Sbjct: 241 AAGLDDIDRQAQYVLLALYTSGRGTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGA 300

Query: 301 PLWEQEVASSVE 312
           PLWEQE ASSVE
Sbjct: 301 PLWEQEAASSVE 312


>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%)

Query: 204 DLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGR 263
           DL  LV+HLKFVIPDET  + P+ L  FVA+YQ+ A AAGL DIDRQ  YVL+ALYTSG+
Sbjct: 56  DLKALVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGK 115

Query: 264 GTAHPRMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQ 305
           G   P  + +M  PPAS D + +A+  +P+ V+++G PLW+ 
Sbjct: 116 GVERPEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDN 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,060,054
Number of extensions: 45220
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)