BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0281.p (982 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 1977 0.0 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 326 7e-90 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 313 3e-86 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 298 1e-81 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 280 3e-76 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 1977 bits (5122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 978/982 (99%), Positives = 978/982 (99%) Query: 1 MSDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLR 60 MSDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLR Sbjct: 1 MSDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLR 60 Query: 61 LKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSR 120 LKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSR Sbjct: 61 LKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSR 120 Query: 121 VWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAA 180 VWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAA Sbjct: 121 VWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAA 180 Query: 181 EGLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSI 240 EGLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSI Sbjct: 181 EGLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSI 240 Query: 241 QALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAA 300 QALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAA Sbjct: 241 QALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAA 300 Query: 301 EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGASRQYAVLSV 360 EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGA RQYAVLSV Sbjct: 301 EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAPRQYAVLSV 360 Query: 361 MSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAG 420 MSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAG Sbjct: 361 MSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAG 420 Query: 421 VIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASS 480 VIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASS Sbjct: 421 VIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASS 480 Query: 481 AGEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIE 540 AGEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIE Sbjct: 481 AGEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIE 540 Query: 541 DDIDRPVIVGALYNGRGEGAAEPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNA 600 DDIDRPVIVGALYNGRGEGAA PTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNA Sbjct: 541 DDIDRPVIVGALYNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNA 600 Query: 601 PTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLG 660 PTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLG Sbjct: 601 PTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLG 660 Query: 661 HLIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMAL 720 HLIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMAL Sbjct: 661 HLIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMAL 720 Query: 721 LKQAALLGKTFNEATLTHKTVGLASHLGPTQPSASTINDSAAPLEAIRVAASGMVDGSPE 780 LKQAALLGKTFNEATLTHKTVGLASHLGPTQ SASTINDSAAPLEAIRVAASGMVDGSPE Sbjct: 721 LKQAALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPE 780 Query: 781 NSGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQ 840 NSGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQ Sbjct: 781 NSGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQ 840 Query: 841 VAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTAQARDQVRVIS 900 VAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLT QARDQVRVIS Sbjct: 841 VAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVIS 900 Query: 901 ANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQM 960 ANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQM Sbjct: 901 ANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQM 960 Query: 961 PNSVCKDCILNAMKQGAPGVLV 982 PNSVCKDCILNAMKQGAPGVLV Sbjct: 961 PNSVCKDCILNAMKQGAPGVLV 982 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 326 bits (835), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 304/939 (32%), Positives = 422/939 (44%), Gaps = 130/939 (13%) Query: 49 EVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVP 108 ++ LSL+A + L+ L+GQ L+ +DG F G V G+ GG+ARY L I P Sbjct: 65 QLSCLSLNADISLRKLLGQ-PVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLTIEP 123 Query: 109 WVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHA----AWTWTDEVAPFMQQVQPRSYTI 164 W+ L +S V+QD + I+E VFADY AW + A + RS Sbjct: 124 WLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAK---RSLAT 180 Query: 165 QYRESNLAFVSRLLAAEGLSWRVEESADAAS---GHRLVLFADSTSPRAFPEDLTSTSPL 221 QY+E++LAFV+RL+ EGL + +E D+ S G V+ AD S P Sbjct: 181 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNG---------SFKPN 231 Query: 222 GGSGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKD 281 S + F A QD+I + R Q + +L++DY+ A S + E D Sbjct: 232 ARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGE-NAHD 290 Query: 282 APRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGP 341 L S D+PG Y +A A ++A E RNK++ TVR+ PGT FTL Sbjct: 291 KLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTG-- 348 Query: 342 LGLSAAQDGASRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLL 401 G Q+ +L V+ NNL D G+ L G L+D Sbjct: 349 --HYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQ--LDD------------ 392 Query: 402 HGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATA 461 H G L T + QAR + Y N FEAIR + +RP+L D G RL+ + A Sbjct: 393 HDHKGS-----LLDTALRSADTQARPV-YRNRFEAIRNKIPYRPLLVDAQGERLYPKPQA 446 Query: 462 RGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQ------------------GRNN 503 G QSA+VVG QG+ +H DR R+R++FHWQ G Sbjct: 447 HGQQSAVVVGAQGQA-------VHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPA 499 Query: 504 DAAATCWVRV-AQRAASGGA--GMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGA 560 + A WVRV A A + GA G Q +PR+GQEVL+ FIE DIDRPV++G LYNGRG Sbjct: 500 NEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGV-- 557 Query: 561 AEPTPGGDTAQAGSDDPARAFTSATDLQASGQG-NLAGGNAPTWHGGSQDSDGHGNTAAQ 619 D AQ +GQG A GNAP W GS S H + A Sbjct: 558 -------DNAQGNQ---------------AGQGAGSATGNAPAWFPGS--SGAHNHAAVL 593 Query: 620 WGIRSKEF-----GGSGYNQIVFDDTDAQGRIQLK----TTQSGSELNLGHLIHTADNYR 670 GI+++ GG GYNQ+VFDD+ Q R L+ SELNLG L DN R Sbjct: 594 SGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQR 653 Query: 671 GSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKT 730 + G G EL+T ALRAG G+L S+ K S D G++ L ++A + Sbjct: 654 LATTGQGFELKTLYSAALRAGQGLLVSTEK------SISAQLDMTQGLSQLSESAQKQQQ 707 Query: 731 FNEATLTHKTVGLASHLGPTQPSASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAAN 790 E H P+ + +S L+A + A++G + S A A Sbjct: 708 LAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTA 767 Query: 791 TQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVA-GN-QYRL 848 + +L ++ G+ AV +A G T ++ +G D Q+A GN Y Sbjct: 768 FSAPQLQL----------SSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLS 817 Query: 849 RSGQALGVLAGAMAAGEGG--TGLQMIAAQKNIDVQAQADGLTAQARDQVRVISANAGVD 906 +SG +L A + TG+ + AA + VQ+QA + Q+ V S V Sbjct: 818 KSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVS 877 Query: 907 WAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQK 945 A + + L+ A GA + +EGGNI V PG + A+ K Sbjct: 878 VAGKQHVQLA-AQGAWLRLEGGNIEVHGPGAMEFRASAK 915 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 313 bits (803), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 298/996 (29%), Positives = 440/996 (44%), Gaps = 175/996 (17%) Query: 15 SRLYSLSLGDAAPAGELL-VEAFAASEGLHAVGLREVIVLSLDAGLRLKSLIGQRATLVT 73 +RL +++ +A E L VE F E ++ ++ LS+ L LK IG +L Sbjct: 25 ARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEISLRL 84 Query: 74 TLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQDKTVIDIVED 133 +DG + G +A+ LG++GGLARYRLR+ ++ L + H+S ++QD TV DI Sbjct: 85 LQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTDIAAA 144 Query: 134 VFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAAEGLSWRVEESADA 193 V +Y P A ++ EV Q + R QYRE++ AF+ R+LA+EGL++R E D Sbjct: 145 VLKEY-PQANFSL--EVT---QTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDD 198 Query: 194 ASG----------HRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQAL 243 A+ H+LV+F + A P G IRFH A E D+I Sbjct: 199 ATQQHDQSQPHARHKLVIFDRNAKAPALPG--------GDEYIRFHRVAAMEASDAITDF 250 Query: 244 AARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDA---PRLESYDSPGLYAYTDAA 300 AA R+++P L S+ + S P+ E DA P L YD G + D Sbjct: 251 AAVRSVRPNGVALASWHPEK-----LSSPSHEEGSTLDAGELPSLPVYDGTGQQDFADQD 305 Query: 301 EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADG---PLGLSAAQDGASRQYAV 357 A +A+L L+A E +NK ++ R L G RFTL P G +A + V Sbjct: 306 AAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPEGENA--------FKV 357 Query: 358 LSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTD 417 +SV NN+ + + + P L AA E L G Sbjct: 358 VSVRHAARNNV----SANITRILAPAAGALFGGSAAAERDDDLQAGT------------- 400 Query: 418 IAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETS 477 Y N+F AIR V P++ RL + TARG+Q+A+V G Sbjct: 401 ------------YRNSFTAIRDSV---PMVPAAIAERL--KPTARGTQTALVTG------ 437 Query: 478 ASSAGEIHCDRLGRVRIRFHWQ----------------------GRNNDAAATCWVRVAQ 515 ++ + DR RV+++FHWQ ND++ T W+RVA+ Sbjct: 438 -AADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKDGNANGNDSSGT-WIRVAE 495 Query: 516 RAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGAAEPTPGGDTAQAGSD 575 + G QF+PR+G EVLV FIE DIDRPV+V LYN GSD Sbjct: 496 AQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYN------------------GSD 537 Query: 576 DPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQI 635 P F + D + G+++G WH + D GSG+NQ Sbjct: 538 AP--PFPAGADSGINHAGSISG-----WHSTAHD-------------------GSGFNQW 571 Query: 636 VFDDTDAQGRIQLKTTQSGSELNLGHLIHTADN--YRGSFRGTGAELRTDAYGALRAGGG 693 V DDT +Q R++L ++ + S+LNLGHL+ AD RGS+RG G ELR+DA+G +R G G Sbjct: 572 VVDDTQSQLRMRLASSTAKSQLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEG 631 Query: 694 ILFSSYKIEQNAAS-RDPAGDNVGGMALLKQAALLGKTFNEATLTHKTVGLASHLGPTQP 752 +L S+ N AS D G +A LK A L +T +++ + + L Sbjct: 632 LLLSTTARPLNGASVTGTQMDAAGAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTD 691 Query: 753 SASTINDSAAPLEAIRVAASGMV--DGSPENSGADVAAANTQTGESKLPHSTAALIGIAA 810 + I+ S V + DGS N+ D A + ++ + + + I + Sbjct: 692 FLALIDPSDQGKHPASVNGQDALKSDGSTRNT--DAAQPVEKFAKAAVLMDSPSSINWTS 749 Query: 811 KEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVLAGAMAAGEGGTGL 870 A +++Q V+ + + AG S +GG + Sbjct: 750 NASTLLYAAENLQWTTQGDVHWSAADTASAAAGKAASFYS-------------HDGG--I 794 Query: 871 QMIAAQKNIDVQAQADGLTAQARDQVRVISANAGVDWAAAKKITLSTAGGANITIEGGNI 930 Q AA + +QA D L A V V S N ++ A +KI L AG A++T+EGGNI Sbjct: 795 QAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKIVLQ-AGQASVTLEGGNI 853 Query: 931 TVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNSVCK 966 T CPG ++ A F G S + L +P++ K Sbjct: 854 TFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYK 889 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 279/946 (29%), Positives = 409/946 (43%), Gaps = 174/946 (18%) Query: 31 LLVEAFAASEGLHAVGLREVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEA 90 LL + SE L + ++S + LK LI Q TL G V+ A Sbjct: 46 LLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTA 105 Query: 91 AKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHAAWTWTDEV 150 +LGS+G LA +++ + PW+ L ++R+WQD DI+ DVF +A + V Sbjct: 106 RRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQHAYARGNYRFEIV 165 Query: 151 APFMQQVQPRSYTIQYRESNLAFVSRLLAAEGLSWRVEESADAASGHRLVLFADSTSPRA 210 P + PRSY QY E++ FV RL+ EG E+ D SGH LV+ D+T Sbjct: 166 TPAL----PRSYCTQY-ETDWHFVQRLMEEEGWYAYHEQKPD-GSGHVLVI-TDNTD--- 215 Query: 211 FPEDLTSTSPLGGSGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKS----KQA 266 PL + FH ++E + I +A R L + DYKS KQ Sbjct: 216 ------QAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQT 269 Query: 267 VATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTV 326 LP G+ LE Y+ G Y+Y + D ARL +E E+ K + S Sbjct: 270 QERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGA 325 Query: 327 RTLRPGTRFTLADGPLGLSAAQDGASR---QYAVLSVMSVGVNNLPKDAAEGLAELF-GP 382 RTL G FTL D P A G S+ Q+ +++V NNLP G A F G Sbjct: 326 RTLAAGRWFTLTDHP-----AHRGDSKQDSQFMLIAVEWFIENNLP---LSGTARDFPGS 377 Query: 383 IPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVI 442 + P L+ A+ G+S D AG AR N FE R + Sbjct: 378 LKPQLDAFKASM--------GRSNDD----------AG--GNARTGHCFNRFEVQRRKLP 417 Query: 443 WRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQGRN 502 +R D T +H Q+A+VVGPQGE E+ D+L RV+++F W N Sbjct: 418 YRSPF-DHTKPVMHP-------QTAVVVGPQGE-------EVFTDKLNRVKVQFRWDRIN 462 Query: 503 -NDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGAA 561 D A+CWVRV+ A G +PR+GQE+++ F+ D DRPV G L+N Sbjct: 463 PGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE----- 517 Query: 562 EPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQWG 621 P WH +DG + G Sbjct: 518 -------------------------------------QPPQWH-----TDGRLS-----G 530 Query: 622 IRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLGHLIHTADNYRGSFRGTGAELR 681 ++SKEFGG+G+NQ+V DDT +Q R+ L ++QS ++LNLG+L+ ADN R +F G+G L Sbjct: 531 LKSKEFGGNGFNQLVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALS 590 Query: 682 TDAYGALRAGGGILFSSYKIEQNAASRDPAG---DNVGGMALLKQAALLGKTFNEATLTH 738 TD YGA+ G+ SSY P G D +L+K +A L + +++ Sbjct: 591 TDDYGAVVTQKGLYLSSY------GRPGPQGTQLDASEATSLMKASADLARGLSDS---- 640 Query: 739 KTVGLASHLGPTQPSASTINDSAAPLEAIRVAASGMVDGSPEN-SGADVAAANTQTGESK 797 AS G + ++ D VD + + SG +AN K Sbjct: 641 -----ASRAGAEALAQDSLKD--------------FVDATEDKYSGQGQGSAN----RFK 677 Query: 798 LPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVL 857 P L+ +AA G+G Q Q+ + + L SG D+ +G + + + Sbjct: 678 KP-----LLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLF 732 Query: 858 AGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTAQARDQVRVISANAGVDWAAAKKITLST 917 A G+++ AA+ +++QAQ+D L A R++S + V+ A ++ +S Sbjct: 733 A-------QNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMIS- 784 Query: 918 AGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNS 963 AGG+ I I IT PGK A+ GP S+ +P + S Sbjct: 785 AGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKS 830 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 280 bits (717), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 268/929 (28%), Positives = 405/929 (43%), Gaps = 160/929 (17%) Query: 31 LLVEAFAASEGLHAVGLREVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEA 90 LL + A+E L+ + +L+ G+ L+ LI Q TL DG G V+ A Sbjct: 34 LLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVTLWIRQHDGDTLPLHGYVHTA 93 Query: 91 AKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHAAWTWTDEV 150 +LGS+G L +L + PW+ L ++R+WQDK DI+ DVF ++ P A + ++ Sbjct: 94 KRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTEDILADVFNNH-PQARGHYRFQL 152 Query: 151 A-PFMQQVQPRSYTIQYRESNLAFVSRLLAAEGLSWRVEESADAASGHRLVLFADSTSPR 209 P+ PR Y QY E++ FV RL+ EG E+ D SGH LV+ ++ + Sbjct: 153 ERPYT----PRPYCTQY-ETDWHFVQRLMEEEGWFAHHEQRED-GSGHVLVITDNTWNLP 206 Query: 210 AFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKS----KQ 265 P+ GI FH R+E D I +A R L + S DYKS K+ Sbjct: 207 GLPQ----------QGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKSPGMKKE 256 Query: 266 AVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARST 325 A +P E+G A +LE Y+ G Y++ + + A L +E E+ + + A S Sbjct: 257 AEEQVMP---EYGQLPA-QLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAVSG 312 Query: 326 VRTLRPGTRFTLADGPLGLSAAQDGASRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPP 385 VR L G F L + P A+ RQ+ +L++ NNLP L+ P Sbjct: 313 VRNLACGRWFRLEEHP--QHRAEPDRERQFVILAIDWFVENNLP------LSHQALDFPG 364 Query: 386 LLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAGVIAQARQLGYA-NAFEAIRADVIWR 444 L+ + A +E S+ + + +TD G+ N FE R + +R Sbjct: 365 SLKGALMAFKE--SIRRERQ-------VAETD-------NEHTGHCFNRFEVQRRKLPFR 408 Query: 445 PVLADGTGLRLHARATARGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQGRN-N 503 P R HAR Q+AIVVGP E E++ D L R++++F W N Sbjct: 409 PA-------RAHARPVML-PQTAIVVGPASE-------EVYTDHLDRIKVQFRWDRINPG 453 Query: 504 DAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGAAEP 563 + AA+CWVRV+ A G +PRIGQEV+V F+ D DRPV+ G L+N Sbjct: 454 NEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAE------- 506 Query: 564 TPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQWGIR 623 P WH + S G++ Sbjct: 507 -----------------------------------QRPQWHTNGRLS----------GVK 521 Query: 624 SKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLGHLIHTADNYRGSFRGTGAELRTD 683 SKEFGG+G+NQ+V DDT Q RI L +T + ++LNLGHL+ N R SF G+G L TD Sbjct: 522 SKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFALSTD 581 Query: 684 AYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKTFNEATLTHKTVGL 743 AYGA+ G+ S+Y ++ A + G LK A L +T +E Sbjct: 582 AYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQ---LKSGANLSRTLSET--------- 629 Query: 744 ASHLGPTQPSASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAANTQTGESKLPHSTA 803 +A + A EA+R +D + A +++ Sbjct: 630 ---------AAKAGAEPLAGQEALR----DFIDAT--------QADYEDPSQAQANRFQQ 668 Query: 804 ALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVLAGAMAA 863 A++ A+ +G+G + + G + L SGAD+ G L +A ++ Sbjct: 669 AILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSL-------LASVAEKISL 721 Query: 864 GEGGTGLQMIAAQKNIDVQAQADGLTAQARDQVRVISANAGVDWAAAKKITLSTAGGANI 923 G+++ +A+ ++VQAQ+D L A R++SA+ V+ AK+ L TAGG+ I Sbjct: 722 FAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVE-IRAKEEVLITAGGSFI 780 Query: 924 TIEGGNITVQCPGKLTIHAAQKLFAGPVS 952 + IT G A GP + Sbjct: 781 RLNASGITQGTSGAWEAKAGTHAMPGPTT 809 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,202,944 Number of extensions: 144549 Number of successful extensions: 540 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 481 Number of HSP's successfully gapped: 20 Length of query: 982 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 887 Effective length of database: 1,170,045 Effective search space: 1037829915 Effective search space used: 1037829915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)