BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0277.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310096|ref|YP_003774188.1| transmembrane protein [Herbaspi...   568   e-163
gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C, D,D-ca...   449   e-127

>gi|300310096|ref|YP_003774188.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  568 bits (1464), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/279 (99%), Positives = 279/279 (100%)

Query: 1   VLFLLIIFYLLVTCFAMWLLLFPSGRELTLAFINSRMASLRQRWDRWNRKGDAVLAGTAS 60
           +LFLLIIFYLLVTCFAMWLLLFPSGRELTLAF+NSRMASLRQRWDRWNRKGDAVLAGTAS
Sbjct: 1   MLFLLIIFYLLVTCFAMWLLLFPSGRELTLAFLNSRMASLRQRWDRWNRKGDAVLAGTAS 60

Query: 61  GIRHSFSASIGYVRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAEL 120
           GIRHSFSASIGYVRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAEL
Sbjct: 61  GIRHSFSASIGYVRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAEL 120

Query: 121 LKGELLVPPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGI 180
           LKGELLVPPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGI
Sbjct: 121 LKGELLVPPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGI 180

Query: 181 EMALIEGYRSPERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240
           EMALIEGYRSPERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM
Sbjct: 181 EMALIEGYRSPERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240

Query: 241 EAYRHYGEVAESVGLTWGGRWKLMDFGHTEYRLPGVMKK 279
           EAYRHYGEVAESVGLTWGGRWKLMDFGHTEYRLPGVMKK
Sbjct: 241 EAYRHYGEVAESVGLTWGGRWKLMDFGHTEYRLPGVMKK 279


>gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C,
           D,D-carboxypeptidase VanY/endolysins protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  449 bits (1156), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/279 (75%), Positives = 241/279 (86%)

Query: 1   VLFLLIIFYLLVTCFAMWLLLFPSGRELTLAFINSRMASLRQRWDRWNRKGDAVLAGTAS 60
           ++FLLI  YLLV+  AMWLLLFPSGR  TL F+ +R + LR RW+R+N +GD ++A   S
Sbjct: 1   MVFLLIATYLLVSGLAMWLLLFPSGRAQTLRFLQTRCSRLRNRWERYNDRGDQMIAEVTS 60

Query: 61  GIRHSFSASIGYVRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAEL 120
            IR S ++ + YVR NY+++ +++ LLIGPAI+A +L+GKSML GF+   R  N+QIAEL
Sbjct: 61  NIRSSLTSRLNYVRKNYLVLSIIVALLIGPAIVALLLAGKSMLQGFDDTQRATNSQIAEL 120

Query: 121 LKGELLVPPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGI 180
           LKGE LV PPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEK+G 
Sbjct: 121 LKGEQLVAPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKHGY 180

Query: 181 EMALIEGYRSPERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240
           EMALIEGYRSP+RQNMLAGMGG +TNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM
Sbjct: 181 EMALIEGYRSPQRQNMLAGMGGGITNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240

Query: 241 EAYRHYGEVAESVGLTWGGRWKLMDFGHTEYRLPGVMKK 279
             YR YGEVAESVGLTWGGRWKLMDFGHTEYR+PGVMKK
Sbjct: 241 AGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKK 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,278
Number of extensions: 27169
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)