BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0273.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310092|ref|YP_003774184.1| hypothetical protein Hsero_0757...   662   0.0  
gi|300313315|ref|YP_003777407.1| hypothetical protein Hsero_4028...   495   e-141

>gi|300310092|ref|YP_003774184.1| hypothetical protein Hsero_0757
           [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/328 (99%), Positives = 327/328 (99%)

Query: 1   MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK 60
           MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK
Sbjct: 1   MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK 60

Query: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR 120
           PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR
Sbjct: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR 120

Query: 121 LETLTNGVLSATDPAAPLQTLATTTLELDINSAGYNAAFADFLDMQTLGGLQQMLEQAGF 180
           LETLTNGVLSA DPAAPLQTLATTTLELDINSAGYNAAFADFLDMQTLGGLQQMLEQAGF
Sbjct: 121 LETLTNGVLSANDPAAPLQTLATTTLELDINSAGYNAAFADFLDMQTLGGLQQMLEQAGF 180

Query: 181 TGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSRAD 240
           TGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSRAD
Sbjct: 181 TGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSRAD 240

Query: 241 FELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDYGI 300
           FELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDYGI
Sbjct: 241 FELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDYGI 300

Query: 301 QKLSSYLSHPGLSLKSALDSFREAFIGA 328
           QKLSSYLSHPGLSLKSALDSFREAFIGA
Sbjct: 301 QKLSSYLSHPGLSLKSALDSFREAFIGA 328


>gi|300313315|ref|YP_003777407.1| hypothetical protein Hsero_4028
           [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  495 bits (1274), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/330 (75%), Positives = 282/330 (85%), Gaps = 2/330 (0%)

Query: 1   MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK 60
           MSATGT IK+GYFGKIP RGDFIKATD A+LITLLDNWLAQ ME+L+RD RWKIIYDGVK
Sbjct: 1   MSATGTHIKIGYFGKIPARGDFIKATDQAALITLLDNWLAQAMELLSRDARWKIIYDGVK 60

Query: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR 120
           PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSA +++DP AFV N PLIL+RLW+R
Sbjct: 61  PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAFDIDDPVAFVGNSPLILARLWSR 120

Query: 121 LETLTNGVLSATDPAAPLQTLATTTLELDI--NSAGYNAAFADFLDMQTLGGLQQMLEQA 178
           +E+    VL+  DP   LQ +A+TT+ELDI  N  GY AAF DFL++ T G LQQML  A
Sbjct: 121 MESQIQEVLTTPDPGQSLQAMASTTVELDIDSNGYGYGAAFTDFLELHTTGSLQQMLADA 180

Query: 179 GFTGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSR 238
           GF G  RQLLLALGLLL PVM STSSRLDKNLILPLP D MYR LVASFWM+LITPFL+R
Sbjct: 181 GFNGNLRQLLLALGLLLHPVMVSTSSRLDKNLILPLPHDTMYRGLVASFWMHLITPFLTR 240

Query: 239 ADFELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDY 298
           ADFEL+LFLT ++EQP M LGFSGASPRTLHSV+D+ AGAEHNI+FD A+W+EEHV  +Y
Sbjct: 241 ADFELSLFLTRMEEQPCMFLGFSGASPRTLHSVMDTVAGAEHNISFDDAEWVEEHVGGNY 300

Query: 299 GIQKLSSYLSHPGLSLKSALDSFREAFIGA 328
           G+QKLSSYL+HP LSL+SA+DSF +AF GA
Sbjct: 301 GVQKLSSYLAHPELSLRSAIDSFHDAFTGA 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 945,602
Number of extensions: 34500
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)