BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0272.p (271 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310091|ref|YP_003774183.1| outer membrane protein and rela... 542 e-155 gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser... 438 e-124 gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp... 86 5e-18 gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri... 81 1e-16 >gi|300310091|ref|YP_003774183.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Herbaspirillum seropedicae SmR1] Length = 271 Score = 542 bits (1396), Expect = e-155, Method: Compositional matrix adjust. Identities = 269/271 (99%), Positives = 271/271 (100%) Query: 1 LDTSFFPSLRRPACVFAAALLCNLANVALAQNAAPPVATPAPGQVLVTGTVPDEASKAAA 60 +DTSFFPSLRRPACVFAAALLCNLANVALAQNAAPPVATPAPGQVLVTGTVPDEASKAAA Sbjct: 1 MDTSFFPSLRRPACVFAAALLCNLANVALAQNAAPPVATPAPGQVLVTGTVPDEASKAAA 60 Query: 61 LARLREVYGADRVVDQIAVGQVVLPANWNNHVQSLISPNLKAVSRGQLKIDGTTVSITGE 120 LARLREVYGADRVVDQIAVGQVVLPANWNNHVQSLISPNLKAVSRGQLKIDGTTVSITGE Sbjct: 61 LARLREVYGADRVVDQIAVGQVVLPANWNNHVQSLISPNLKAVSRGQLKIDGTTVSITGE 120 Query: 121 VANEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVVAFESGQATLTPEG 180 VANEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVV+FESGQATLTPEG Sbjct: 121 VANEAQRQQIASDMASSLNSSYTVNNGLRVSTSEQGLLDNALANRVVSFESGQATLTPEG 180 Query: 181 KRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLGAKGVDESLLS 240 KRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLGAKGVDESLLS Sbjct: 181 KRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAYLGAKGVDESLLS 240 Query: 241 TSGQGPDRPVASNATAEGRAKNRRIEFRIAK 271 TSGQGPDRPVASNATAEGRAKNRRIEFRIAK Sbjct: 241 TSGQGPDRPVASNATAEGRAKNRRIEFRIAK 271 >gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/256 (84%), Positives = 235/256 (91%) Query: 16 FAAALLCNLANVALAQNAAPPVATPAPGQVLVTGTVPDEASKAAALARLREVYGADRVVD 75 A + +C + AQN APPVATPAPGQVLVTGTVPDEASKAAAL RLRE+YG DRVVD Sbjct: 12 LALSAVCLSCTTSDAQNLAPPVATPAPGQVLVTGTVPDEASKAAALTRLRELYGHDRVVD 71 Query: 76 QIAVGQVVLPANWNNHVQSLISPNLKAVSRGQLKIDGTTVSITGEVANEAQRQQIASDMA 135 QI+VG VVLPANWNNHVQ LISPNLKAV +GQLKIDGT VSI+GEV++EAQRQQIASDMA Sbjct: 72 QISVGPVVLPANWNNHVQKLISPNLKAVRQGQLKIDGTNVSISGEVSHEAQRQQIASDMA 131 Query: 136 SSLNSSYTVNNGLRVSTSEQGLLDNALANRVVAFESGQATLTPEGKRILDEIAATMLKLK 195 +SLNSSY +NNGLRVSTSEQG+LDN LANRVV+FESG+ATLTPEGKRILDEIAATML+LK Sbjct: 132 TSLNSSYIINNGLRVSTSEQGVLDNTLANRVVSFESGRATLTPEGKRILDEIAATMLQLK 191 Query: 196 GRHVEIIGNTDNEGLRASNISLSLARADAVKAYLGAKGVDESLLSTSGQGPDRPVASNAT 255 GR VEIIGNTDNEGLRASNISLSLARADAVKAYL KGVD+SLL+TSGQGPDRPVASNAT Sbjct: 192 GRRVEIIGNTDNEGLRASNISLSLARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNAT 251 Query: 256 AEGRAKNRRIEFRIAK 271 +EGRA+NRRIEFRIAK Sbjct: 252 SEGRARNRRIEFRIAK 267 >gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 6/104 (5%) Query: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAV 225 F+ +ATL P GK LDE+ LK ++E+I G+TD+ G A N LS+ RA++V Sbjct: 98 FDFDKATLKPAGKAKLDELVGN---LKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESV 154 Query: 226 KAYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269 KAYL +KGV+ + + T G+G +PVA N TA GRAKNRR+E + Sbjct: 155 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 65/105 (61%) Query: 167 VAFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVK 226 ++F++G+A + PE + +LD AAT+++ V I+G+TDN G A N LSL RA + Sbjct: 110 ISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTR 169 Query: 227 AYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRIAK 271 YL ++GV + S G+G P+ +N + RA+NRR+E +A+ Sbjct: 170 DYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFVAE 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,026 Number of extensions: 27386 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 4 Length of query: 271 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 187 Effective length of database: 1,222,130 Effective search space: 228538310 Effective search space used: 228538310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)