BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0271.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755...   728   0.0  
gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030...   538   e-154

>gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/360 (99%), Positives = 359/360 (99%)

Query: 1   MSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQ 60
           MSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQ
Sbjct: 16  MSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQ 75

Query: 61  HCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHD 120
           HCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHD
Sbjct: 76  HCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHD 135

Query: 121 QRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANAERIANEGGQPEEGVK 180
           QRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANAERIANEGGQPEEGVK
Sbjct: 136 QRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANAERIANEGGQPEEGVK 195

Query: 181 LAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNGPGFSAAREALTAVRE 240
           LAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNGPGFSAAREAL AVRE
Sbjct: 196 LAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNGPGFSAAREALIAVRE 255

Query: 241 TVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMMQQGPIRTRAEAIAQL 300
           TVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMMQQGPIRTRAEAIAQL
Sbjct: 256 TVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMMQQGPIRTRAEAIAQL 315

Query: 301 RAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTLSHVEELLGLLPPRRE 360
           RAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTLSHVEELLGLLPPRRE
Sbjct: 316 RAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTLSHVEELLGLLPPRRE 375


>gi|300313317|ref|YP_003777409.1| hypothetical protein Hsero_4030
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 263/359 (73%), Positives = 296/359 (82%)

Query: 2   SAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQH 61
           + I+ LL PI++  P GEDLSFT DLDAIA+ARRFDDPTLDQGEWV DIKEADW FVEQ 
Sbjct: 17  TVIDVLLKPISNEHPGGEDLSFTTDLDAIAQARRFDDPTLDQGEWVTDIKEADWSFVEQR 76

Query: 62  CARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHDQ 121
           CA+L+E RSKDLRLAVWY EAACKTRGLRGLGDGFLL+AGLFD+FWD++YP SE+GDHD+
Sbjct: 77  CAQLIETRSKDLRLAVWYGEAACKTRGLRGLGDGFLLMAGLFDQFWDHLYPLSEDGDHDR 136

Query: 122 RVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANAERIANEGGQPEEGVKL 181
           RVGNLTWLL+RSV MS EI LTEGRGSA+SL DF +ARTRAANAERI NEGG PEEGVKL
Sbjct: 137 RVGNLTWLLSRSVQMSHEIPLTEGRGSAFSLFDFNSARTRAANAERIVNEGGLPEEGVKL 196

Query: 182 AVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNGPGFSAAREALTAVRET 241
           AVME+ARKRSSHAFYEAML D+QYC   LEQLE  VD RLGV+GPGFSAAREA   V +T
Sbjct: 197 AVMESARKRSSHAFYEAMLEDAQYCRHCLEQLENIVDHRLGVDGPGFSAAREATKLVHDT 256

Query: 242 VARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMMQQGPIRTRAEAIAQLR 301
           + RFAA+TGLRS    +S        A A   +      +  +  QGPIRTRAEAI QLR
Sbjct: 257 IVRFAAETGLRSAVSAESILIDGDDAAVAAQLTGSGGSASAVLQHQGPIRTRAEAIGQLR 316

Query: 302 AVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTLSHVEELLGLLPPRRE 360
           AVAEFFRR+EPHSPVAHLADKAAQWGEMPLHAWL++VIKD + LSHVEELLGL  P+++
Sbjct: 317 AVAEFFRRSEPHSPVAHLADKAAQWGEMPLHAWLRTVIKDGAALSHVEELLGLQAPQQD 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 982,591
Number of extensions: 36298
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)