BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0268.p (941 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 1789 0.0 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 372 e-104 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 336 6e-93 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 327 3e-90 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 292 7e-80 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 1789 bits (4634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 924/944 (97%), Positives = 929/944 (98%), Gaps = 3/944 (0%) Query: 1 MNLSDLAALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIA 60 MNLSDL ALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIA Sbjct: 1 MNLSDLPALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIA 60 Query: 61 GYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLT 120 GYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLT Sbjct: 61 GYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLT 120 Query: 121 IEPWLSFLRHRRDSAVFQDMSAPVIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLAT 180 IEPWLSFLRHRRDSAVFQDMSAP IIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLAT Sbjct: 121 IEPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLAT 180 Query: 181 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQ 240 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQ Sbjct: 181 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQ 240 Query: 241 TNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQAAVRAASTASSGENAHDKLVLTSRDAP 300 TNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQ AVRAASTASSGENAHDKLVLTSRDAP Sbjct: 241 TNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHDKLVLTSRDAP 300 Query: 301 GQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQF 360 GQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQF Sbjct: 301 GQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQF 360 Query: 361 VLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFE 420 VLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFE Sbjct: 361 VLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFE 420 Query: 421 AIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGVQGQAVHTDRDNRIRVQFHWQRGE 480 AIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVG QGQAVHTDRDNRIRVQFHWQRGE Sbjct: 421 AIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRIRVQFHWQRGE 480 Query: 481 RSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEG 540 RSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEG Sbjct: 481 RSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEG 540 Query: 541 DIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQA 600 DIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQA Sbjct: 541 DIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQA 600 Query: 601 LSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLAATGQG 660 LSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLA TGQG Sbjct: 601 LSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLATTGQG 660 Query: 661 FELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLE 720 FELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLE Sbjct: 661 FELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLE 720 Query: 721 GESDAAKLPAVEAMGESIEVLKATQ---SASTGSSGSDGQGSSATTAFSAPQLQLSSPAG 777 GESDAAKLPAVEAMGESIEVLKATQ + S+GS G ++ATTAFSAPQLQLSSPAG Sbjct: 721 GESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAFSAPQLQLSSPAG 780 Query: 778 IAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETG 837 IAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETG Sbjct: 781 IAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETG 840 Query: 838 MALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKEHVQLAAQGAWLRLEGGNI 897 MALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGK+HVQLAAQGAWLRLEGGNI Sbjct: 841 MALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAAQGAWLRLEGGNI 900 Query: 898 EVHGPGAMEFRASAKELTGPASSGSSASVPAPGPLADCEYKSGA 941 EVHGPGAMEFRASAKELTGPASSGSSASVPAPGPLADCEYKSGA Sbjct: 901 EVHGPGAMEFRASAKELTGPASSGSSASVPAPGPLADCEYKSGA 944 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust. Identities = 315/969 (32%), Positives = 457/969 (47%), Gaps = 134/969 (13%) Query: 9 LFGA-WSQSARVMRLHTPLDQDYG-PHALMAERLQAVEQVGPGEDSSAIDQAIAGYRLQL 66 LFG SQ+AR++ + T Q G P L ER + E V +R + Sbjct: 16 LFGTGLSQNARLITMTTA--QSAGLPETLAVERFEGEESVNDN------------FRFDI 61 Query: 67 SCLSLNADISLRKLLGQPVLLEL-DTDGGARAFHGHVTACRMEGANGGMARYLLTIEPWL 125 LS++ D+ L++ +G + L L DGG RA+HG+ T GA+GG+ARY L +E +L Sbjct: 62 DALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFL 121 Query: 126 SFLRHRRDSAVFQDMSAPVIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQET 185 +FL R DS +FQDM+ I AV +Y P L+ AKR + TQY+ET Sbjct: 122 AFLDRRHDSFLFQDMTVTDIAAAVLKEY-------PQANFSLEVTQTLAKRDICTQYRET 174 Query: 186 DLAFVTRLMVEEGLFYYIEHQGDS------NSASLGSHTVVIADHNGSFK--PNARSTVA 237 D AF+ R++ EGL + EH+ D S H +VI D N P + Sbjct: 175 DYAFLRRILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIR 234 Query: 238 FAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQAAV---RAASTASSGENAHDKLVL 294 F + A+ A D I + +VR + N V + +W + + ST +GE L Sbjct: 235 FHRVAAMEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELPS----L 290 Query: 295 TSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDG 354 D GQ + A A +QA+E++NK F GAG R G FTL H + Sbjct: 291 PVYDGTGQQDFADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPE 350 Query: 355 GDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLD---TALRSADTQA 411 G++ F ++ V H A NN+SA+ +T +L A G+L A R D QA Sbjct: 351 GEN-AFKVVSVRHAARNNVSAN----ITRILAPA-------AGALFGGSAAAERDDDLQA 398 Query: 412 RPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGVQGQAVHTDRDNRIR 471 YRN F AIR+ +P P + ERL KP A G Q+A+V G AV TDR++R++ Sbjct: 399 G-TYRNSFTAIRDSVPMVPAAI---AERL--KPTARGTQTALVTGAADAAVTTDRNHRVK 452 Query: 472 VQFHWQRGERSHSG--LSSPTPDDHVG-APANEQAGTWVRVLAGLAPTAGANWGGQAVPR 528 VQFHWQRG+ + G + DD G A N+ +GTW+RV +G NWG Q +PR Sbjct: 453 VQFHWQRGKSPNPGGLRETGNLDDKDGNANGNDSSGTWIRVAEA---QSGPNWGSQFIPR 509 Query: 529 VGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHN 588 VG EVL+DFIEGDIDRPVV+ LYNG +AP + G+ N Sbjct: 510 VGSEVLVDFIEGDIDRPVVVAQLYNG-------------------SDAPPFPAGADSGIN 550 Query: 589 HAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQ 648 HA +SG + A G G+NQ V DD+ Q R L + S+LNLG L +Q Sbjct: 551 HAGSISGWHSTA-----HDGSGFNQWVVDDTQSQLRMRLA----SSTAKSQLNLGHLVEQ 601 Query: 649 TDN--QRLAATGQGFELKTLYSAALRAGQGLLVSTE------KSIS----------AQLD 690 D QR + GQGFEL++ +R G+GLL+ST S++ AQL Sbjct: 602 ADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIAQLK 661 Query: 691 MTQGLSQ-LSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSAST 749 + L+Q +S+SA +QQ L+ T L+ ++D L G+ + + + Sbjct: 662 GAKSLAQTMSDSATQQQALSSTQA-----LQAKTDFLALIDPSDQGKHPASVNGQDALKS 716 Query: 750 GSSGSDGQGSSATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGN 809 S + + F+ + + SP+ I + AS ++ A +++ QG+ Sbjct: 717 DGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLL--------YAAENLQWTTQGD 768 Query: 810 LHYLSKSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASV 869 +H+ + S AS S + G+ AA G VS+Q+ + + K +TV SV Sbjct: 769 VHWSAADTASAAAGKAASFYS---HDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSV 825 Query: 870 GKDVSVAGKEHVQLAAQGAWLRLEGGNIEVHGPGAMEFRASAKELTGPASSGSSASVPAP 929 + + ++ + L A A + LEGGNI PG + + G G+S S P Sbjct: 826 NDSIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPG----GASVS-PDL 880 Query: 930 GPLADCEYK 938 L D +YK Sbjct: 881 MALPDTKYK 889 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 336 bits (861), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 311/956 (32%), Positives = 436/956 (45%), Gaps = 137/956 (14%) Query: 65 QLSCLSLNADISLRKLLGQ-PVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLTIEP 123 ++ LSL+A + L+ L+GQ L+ +DG F G V G+ GG+ARY L I P Sbjct: 49 EVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVP 108 Query: 124 WLSFLRHRRDSAVFQDMSAPVIIEAVFADYRGQGRLQPAWRLDLQDASAYAK---RSLAT 180 W+ L +S V+QD + I+E VFADY AW + A + RS Sbjct: 109 WVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHA----AWTWTDEVAPFMQQVQPRSYTI 164 Query: 181 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNG---------SFKPN 231 QY+E++LAFV+RL+ EGL + +E D+ S G V+ AD S P Sbjct: 165 QYRESNLAFVSRLLAAEGLSWRVEESADAAS---GHRLVLFADSTSPRAFPEDLTSTSPL 221 Query: 232 ARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQAAVRAASTASSGE-NAHD 290 S + F A QD+I + R Q + +L++DY+ A S + E D Sbjct: 222 GGSGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKD 281 Query: 291 KLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLT--- 347 L S D+PG Y +A A ++A E RNK++ TVR+ PGT FTL Sbjct: 282 APRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGP 341 Query: 348 -GHYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQ--LDD------------ 392 G G Q+ +L V+ NNL D G+ L G L+D Sbjct: 342 LGLSAAQDGAPRQYAVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLL 401 Query: 393 HDHKGS-----LLDTALRSADTQARPV-YRNRFEAIRNKIPYRPLLVDAQGERLYPKPQA 446 H G L T + QAR + Y N FEAIR + +RP+L D G RL+ + A Sbjct: 402 HGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATA 461 Query: 447 HGQQSAVVVGVQGQA-------VHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPA 499 G QSA+VVG QG+ +H DR R+R++FHWQ G Sbjct: 462 RGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQ------------------GRNN 503 Query: 500 NEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGV-- 557 + A WVRV A A + GA G Q +PR+GQEVL+ FIE DIDRPV++G LYNGRG Sbjct: 504 DAAATCWVRV-AQRAASGGA--GMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGA 560 Query: 558 -------DNAQGNQ---------------AGQGAGSATGNAPAWFPGS--SGAHNHAAVL 593 D AQ +GQG A GNAP W GS S H + A Sbjct: 561 AAPTPGGDTAQAGSDDPARAFTSATDLQASGQG-NLAGGNAPTWHGGSQDSDGHGNTAAQ 619 Query: 594 SGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQR 653 GI+++ + GG GYNQ+VFDD+ Q R L+ SELNLG L DN R Sbjct: 620 WGIRSK-----EFGGSGYNQIVFDDTDAQGRIQLK----TTQSGSELNLGHLIHTADNYR 670 Query: 654 LAATGQGFELKTLYSAALRAGQGLLVSTEK------SISAQLDMTQGLSQLSESAQKQQQ 707 + G G EL+T ALRAG G+L S+ K S D G++ L ++A + Sbjct: 671 GSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKT 730 Query: 708 LAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTG-------SSGSDGQGSS 760 E H + + +S L+A + A++G +SG+D ++ Sbjct: 731 FNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAAN 790 Query: 761 ATTAFS------APQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLS 814 T S A + +++ G+ AV +A G T ++ +G D Q+A GN Y Sbjct: 791 TQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVA-GN-QYRL 848 Query: 815 KSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVS 874 +SG +L A + TG+ + AA + VQ+QA + + Q+ V S V Sbjct: 849 RSGQALGVLAGAMAAGE--GGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISANAGVD 906 Query: 875 VAGKEHVQLA-AQGAWLRLEGGNIEVHGPGAMEFRASAKELTGPASSGSSASVPAP 929 A + + L+ A GA + +EGGNI V PG + A+ K GP S ++P P Sbjct: 907 WAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSK----TLPLP 958 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 327 bits (837), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 301/948 (31%), Positives = 419/948 (44%), Gaps = 179/948 (18%) Query: 3 LSDLAALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGY 62 LS LA F Q R+++L + L GP L+ +R+ E++G GY Sbjct: 20 LSALADTFVG--QEKRILKLDSVL----GPDVLLPQRMVGSERLG------------RGY 61 Query: 63 RLQLSCLSLNADISLRKLLGQPVLLELDTDGGARA-FHGHVTACRMEGANGGMARYLLTI 121 + +S DI L+KL+ QPV L L DG A HG+V R G++G +A + + + Sbjct: 62 DYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGM 121 Query: 122 EPWLSFLRHRRDSAVFQDMSAPVIIEAVFADY---RGQGRLQPAWRLDLQDASAYAKRSL 178 PWL FL++R+D+ ++QD A I+ VF + RG R + + RS Sbjct: 122 APWLHFLKYRKDARIWQDSKADDILADVFDQHAYARGNYRFEIV--------TPALPRSY 173 Query: 179 ATQYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAF 238 TQY ETD FV RLM EEG + Y E + D + H +VI D+ KP A +AF Sbjct: 174 CTQY-ETDWHFVQRLMEEEGWYAYHEQKPDGSG-----HVLVITDNTDQAKPLAPEQLAF 227 Query: 239 AQTNAVMAQDNIDR---WRSVRRWQTNAVEILTWDYR--------QAAVRAASTASSGEN 287 + QD ++R W + R + + T DY+ Q V A GE Sbjct: 228 ---HGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQTQERVLPEHGALPGE- 283 Query: 288 AHDKLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLT 347 L + G Y + RQA +++ E K F G R+ G FTLT Sbjct: 284 ------LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLT 337 Query: 348 GHYDH--DGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSL---LD- 401 H H D D QF+L+ V NNL L G A+ D GSL LD Sbjct: 338 DHPAHRGDSKQDSQFMLIAVEWFIENNL---------PLSGTAR----DFPGSLKPQLDA 384 Query: 402 ---TALRSADT---QARPVY-RNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVV 454 + RS D AR + NRFE R K+PYR + KP H Q+AVV Sbjct: 385 FKASMGRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFD-------HTKPVMH-PQTAVV 436 Query: 455 VGVQGQAVHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLA 514 VG QG+ V TD+ NR++VQF W R P +E+A WVRV Sbjct: 437 VGPQGEEVFTDKLNRVKVQFRWDRIN-----------------PGDEKASCWVRVSY--- 476 Query: 515 PTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATG 574 P AG NWG VPRVGQE++I F+ GD DRPV G L+N Sbjct: 477 PNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE------------------- 517 Query: 575 NAPAWFPGSSGAHNHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAH 634 P W + LSG+K++ GG G+NQLV DD+ Q R H + Sbjct: 518 QPPQW--------HTDGRLSGLKSKEF-----GGNGFNQLVMDDTTSQNRV----HLYSS 560 Query: 635 DGASELNLGLLRQQTDNQRLAATGQGFELKTLYSAALRAGQGLLVST---EKSISAQLDM 691 ++LNLG L Q DN+R G GF L T A+ +GL +S+ QLD Sbjct: 561 QSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDA 620 Query: 692 TQGLSQLSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGS 751 ++ S + SA LA G SD+A EA+ + + LK A+ Sbjct: 621 SEATSLMKASAD----LAR----------GLSDSASRAGAEALAQ--DSLKDFVDATEDK 664 Query: 752 SGSDGQGSSATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLH 811 GQGS+ F P L +++PAGI T + + +++T+GKD + + +L Sbjct: 665 YSGQGQGSA--NRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLL 722 Query: 812 YLSKSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGK 871 K ISLF Q GM L AA GKV +Q+Q+ L + K + S Sbjct: 723 ATVKEKISLFA-----------QNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSG 771 Query: 872 DVSVAGKEHVQLAAQGAWLRLEGGNIEVHGPGAMEFRASAKELTGPAS 919 V + K+ V ++A G+++++ I PG E +AS + GPAS Sbjct: 772 RVEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPAS 819 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 292 bits (748), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 273/932 (29%), Positives = 390/932 (41%), Gaps = 164/932 (17%) Query: 26 LDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGYRLQLSCLSLNADISLRKLLGQPV 85 LD GP L+ +RL A E++ GY + + L+ + I+L +L+ QPV Sbjct: 25 LDSSLGPDILLPQRLVATERLN------------DGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 86 LLEL-DTDGGARAFHGHVTACRMEGANGGMARYLLTIEPWLSFLRHRRDSAVFQDMSAPV 144 L + DG HG+V + G++G + L++ PWL FLR R+D+ ++QD Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 145 IIEAVFADY---RGQGRLQPAWRLDLQDASAYAKRSLATQYQETDLAFVTRLMVEEGLFY 201 I+ VF ++ RG R Q Y R TQY ETD FV RLM EEG F Sbjct: 133 ILADVFNNHPQARGHYRFQLE--------RPYTPRPYCTQY-ETDWHFVQRLMEEEGWFA 183 Query: 202 YIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQTNAVMAQDNIDRWRSVRRWQT 261 + E + D + H +VI D+ + + +AF D I W + R + Sbjct: 184 HHEQREDGSG-----HVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSS 238 Query: 262 NAVEILTWDYRQAAVRA-ASTASSGENAHDKLVLTSRDAPGQYINESPEQAQRQALNQMQ 320 + DY+ ++ A E L + G Y EQ RQA Q++ Sbjct: 239 KGWRGRSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVE 298 Query: 321 AIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDD--QFVLLRVVHQAHNNLS---- 374 E + ++ VR+ G F L H H D QFV+L + NNL Sbjct: 299 QWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQ 358 Query: 375 -----ADLKAGVTALLG------QAQLDDHDHKGSLLDTALRSADTQARPVYRNRFEAIR 423 LK + A Q D++H G NRFE R Sbjct: 359 ALDFPGSLKGALMAFKESIRRERQVAETDNEHTGHCF----------------NRFEVQR 402 Query: 424 NKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGVQGQAVHTDRDNRIRVQFHWQRGERSH 483 K+P+RP A+ L Q+A+VVG + V+TD +RI+VQF W R Sbjct: 403 RKLPFRPARAHARPVML--------PQTAIVVGPASEEVYTDHLDRIKVQFRWDRIN--- 451 Query: 484 SGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDID 543 P NE A WVRV P AG WG VPR+GQEV++ F+ GD D Sbjct: 452 --------------PGNEAASCWVRVSY---PNAGQYWGAIQVPRIGQEVIVSFLNGDPD 494 Query: 544 RPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQALSA 603 RPVV G L+N P W H + LSG+K++ Sbjct: 495 RPVVTGRLFNAE-------------------QRPQW-------HTNGR-LSGVKSKEF-- 525 Query: 604 SQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLAATGQGFEL 663 GG G+NQ+V DD+P Q R H + + ++LNLG L QT N+R + G GF L Sbjct: 526 ---GGTGFNQMVMDDTPEQNRI----HLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFAL 578 Query: 664 KTLYSAALRAGQGLLVSTEKSISA---QLDMTQGLSQLSESAQKQQQLAETAQKHNARLE 720 T A+ +GL +ST A QLD + QL A + L+ETA K Sbjct: 579 STDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAK------ 632 Query: 721 GESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTAFSAPQLQLSSPAGIAA 780 + A L EA+ + I+ ATQ+ S + F L +SP GI Sbjct: 633 --AGAEPLAGQEALRDFID---ATQADYEDPS------QAQANRFQQAILLAASPDGIGL 681 Query: 781 VTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETGMAL 840 TP AG ++++G D + +L ISLF + + G+ L Sbjct: 682 TTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAF-----------KAGIKL 730 Query: 841 HAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKEHVQLAAQGAWLRLEGGNIEVH 900 +A GKV VQ+Q+ L + K + S V + KE V + A G+++RL I Sbjct: 731 FSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGITQG 790 Query: 901 GPGAMEFRASAKELTGPAS-----SGSSASVP 927 GA E +A + GP + + SSA++P Sbjct: 791 TSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP 822 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.128 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,624,100 Number of extensions: 104736 Number of successful extensions: 385 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 10 Length of query: 941 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 847 Effective length of database: 1,174,780 Effective search space: 995038660 Effective search space used: 995038660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 135 (56.6 bits)