BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0267.p (893 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 1804 0.0 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 1444 0.0 gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 533 e-152 gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 276 4e-75 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 1804 bits (4673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 889/893 (99%), Positives = 891/893 (99%) Query: 1 MGINLKSLISKLNDSSRIATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG 60 MGINLKSLISKLNDSSR+ATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG Sbjct: 1 MGINLKSLISKLNDSSRLATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG 60 Query: 61 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL Sbjct: 61 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 Query: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASAAASAAADGQADEQQG 180 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASA+ASAAADGQADEQQG Sbjct: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASASASAAADGQADEQQG 180 Query: 181 GDPVGEMRAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILT 240 GDPVGEMRAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILT Sbjct: 181 GDPVGEMRAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILT 240 Query: 241 GEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVIDE 300 GEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVIDE Sbjct: 241 GEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVIDE 300 Query: 301 VKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEK 360 VKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEK Sbjct: 301 VKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEK 360 Query: 361 DAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQ 420 DAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQ Sbjct: 361 DAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQ 420 Query: 421 LPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATRLGE 480 LPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATRLGE Sbjct: 421 LPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATRLGE 480 Query: 481 LQAQHAQAIAEQTELQQRWEQERALNGRIQAARAALEEANQESASSHDSAAARSELQQLL 540 LQAQHAQAIAEQTELQQRWEQER LNGRIQAARAALEEANQESASS DSAAARSELQQLL Sbjct: 481 LQAQHAQAIAEQTELQQRWEQERELNGRIQAARAALEEANQESASSQDSAAARSELQQLL 540 Query: 541 AQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVLGQP 600 AQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVLGQP Sbjct: 541 AQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVLGQP 600 Query: 601 QATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINM 660 QATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINM Sbjct: 601 QATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINM 660 Query: 661 SEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVF 720 SEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVF Sbjct: 661 SEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVF 720 Query: 721 DKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQLVKA 780 DKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQLVKA Sbjct: 721 DKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQLVKA 780 Query: 781 FKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLARCT 840 FKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLARCT Sbjct: 781 FKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLARCT 840 Query: 841 EVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ 893 EVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ Sbjct: 841 EVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ 893 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 724/896 (80%), Positives = 792/896 (88%), Gaps = 10/896 (1%) Query: 1 MGINLKSLISKLNDSSRIATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSG 60 MGINL+SLI KLN+++R+ATERAA+LC++ YEVDLEHLFLALLE PQ+DFSLI RRSG Sbjct: 1 MGINLRSLICKLNETARLATERAATLCVSCSHYEVDLEHLFLALLEQPQSDFSLIARRSG 60 Query: 61 ISPDSLQADLEHEISQFKNGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 I D LQADLEHEIS F+ GN RTPVLS HL+TLFE+GWLIASL+ PS+RS HLLLAL Sbjct: 61 IDTDGLQADLEHEISTFREGNARTPVLSPHLRTLFENGWLIASLEESNPSVRSAHLLLAL 120 Query: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASAAASAAADGQA-DEQQ 179 LTQ++L+QLAYRGSKLFA+FK+DE+KH+L +LTEGSVE+ A+ GQ D + Sbjct: 121 LTQSDLSQLAYRGSKLFAKFKIDEIKHNLHRLTEGSVESAAIGKT-------GQGGDRES 173 Query: 180 GGDPVGEMRA--GGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNP 237 GGDP+GE++ G+ ALDQYTT LTQRAR+GKIDPV+GRD EIRQAVDILLRRRQNNP Sbjct: 174 GGDPMGELKQLRIGKMTALDQYTTQLTQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNP 233 Query: 238 ILTGEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGV 297 ILTGEAGVGKTAVVEGLALRIAQ DVP+ LQGVEIHTLDMGLLQAGASVKGEFE+RLK V Sbjct: 234 ILTGEAGVGKTAVVEGLALRIAQGDVPKPLQGVEIHTLDMGLLQAGASVKGEFESRLKTV 293 Query: 298 IDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKY 357 IDEVKKS +PIILFIDEAHTMIGA GQAGQ+DAANLLKPALARGELRTIAATTWSEYKKY Sbjct: 294 IDEVKKSAYPIILFIDEAHTMIGAAGQAGQSDAANLLKPALARGELRTIAATTWSEYKKY 353 Query: 358 FEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYIS 417 FEKDAALARRFQVIKVEEP E+VACAMLRAM PLME+HFGVRVYDEA+ EAVRLSHRYIS Sbjct: 354 FEKDAALARRFQVIKVEEPGEDVACAMLRAMVPLMEQHFGVRVYDEAVVEAVRLSHRYIS 413 Query: 418 GRQLPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATR 477 GRQLPDKAISVLDTACAKVALG++ATPA LEGVTRRLERL EI+AL RE SG+ H R Sbjct: 414 GRQLPDKAISVLDTACAKVALGRDATPALLEGVTRRLERLDTEISALRREAASGSQHEER 473 Query: 478 LGELQAQHAQAIAEQTELQQRWEQERALNGRIQAARAALEEANQESASSHDSAAARSELQ 537 L L QH A+AE+ +LQ RWEQER LN RIQ ARA LE A + AAR+EL+ Sbjct: 474 LASLLDQHVCAVAERHDLQLRWEQERELNERIQQARATLENPGTGDARGGNVDAARAELK 533 Query: 538 QLLAQLKEHQGETPMVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVL 597 QLL +L++ QG+ PMVP+QVDGHVVAEIVA WTGIPLGKMVKDEI+TVL LDALL+ERVL Sbjct: 534 QLLDELRQRQGDAPMVPIQVDGHVVAEIVAAWTGIPLGKMVKDEIQTVLDLDALLQERVL 593 Query: 598 GQPQATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLIT 657 GQPQAT+AVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLIT Sbjct: 594 GQPQATSAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLIT 653 Query: 658 INMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFF 717 INMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAH DVLELFF Sbjct: 654 INMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHADVLELFF 713 Query: 718 QVFDKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQL 777 QVFDKGVMDD EGREIDFKNTIIILTSNVAS+Q+MQACLNKS ELPTP+ELD LIRPQL Sbjct: 714 QVFDKGVMDDAEGREIDFKNTIIILTSNVASAQMMQACLNKSQEELPTPEELDTLIRPQL 773 Query: 778 VKAFKPAFLGRLKVIPYYPISDEVLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLA 837 +K FKPAFLGRLKV+PYYPI+D VL +IIKLKL RIA R+AENH+ EFSYDKALVEAVL Sbjct: 774 IKTFKPAFLGRLKVVPYYPIADVVLVEIIKLKLARIAKRVAENHRVEFSYDKALVEAVLG 833 Query: 838 RCTEVDSGARNVDNILNGSLLPEIAESVLARMAEGQGISRIKVSAGKKGDFKYTIQ 893 RCTEVDSGARNVDNIL+G+LLP +AESVL RMAEG I RIKVSA KKGDFKYTIQ Sbjct: 834 RCTEVDSGARNVDNILSGTLLPAVAESVLVRMAEGVEIRRIKVSASKKGDFKYTIQ 889 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 533 bits (1372), Expect = e-152, Method: Compositional matrix adjust. Identities = 343/905 (37%), Positives = 504/905 (55%), Gaps = 72/905 (7%) Query: 3 INLKSLISKLNDSSRIATERAASLCMARGQYEVDLEHLFLALLENPQTDFSLIVRRSGIS 62 + L L +KL + A A S + ++ HL LALL +++R+G++ Sbjct: 1 MRLDKLTTKLQE----ALADAQSQAVGHDNQYIEPVHLILALLNQEDGGARSLLQRAGVN 56 Query: 63 PDSLQADLEHEISQFK--NGNTRTPVLSSHLQTLFEHGWLIASLDGERPSIRSGHLLLAL 120 + L A L+ + + +GN + L L A G++ + S +LL L Sbjct: 57 VNGLSAALQAAVKRLPQVSGNGGEVQVGRELVALLNLADKEAQKHGDQ-FVASEMVLLGL 115 Query: 121 LTQTELAQLAYRGSKLFARFKVDELKHDLAKLTEGSVEAPALASAAASAAADGQADEQQG 180 + A A R + L T S+EA A+ + A+ Q DE Sbjct: 116 VDDKSDAGRAARENGL----------------TRKSLEA-AITAVRGGASVSSQQDE--- 155 Query: 181 GDPVGEMRAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILT 240 G+ AL +YT +LT+RAR GK+DPV+GRD EIR+A+ +L RR +NNP+L Sbjct: 156 ----------GQREALKKYTLDLTERARAGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI 205 Query: 241 GEAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVIDE 300 GE GVGKTA+VEGLA RI +VP +L+ + +LDM L AGA +GEFE RLK V+ E Sbjct: 206 GEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMAALLAGAKYRGEFEERLKAVLKE 265 Query: 301 VKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEK 360 + + I+FIDE HTM+GAG G DA N+LKPALARGEL + ATT EY++Y EK Sbjct: 266 IAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEK 325 Query: 361 DAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQ 420 DAAL RRFQ I V+EP+ E A+LR + E H GV + D AI A LSHRYI+ R Sbjct: 326 DAALERRFQKILVDEPSVEATIAILRGLQEKYEVHHGVDITDPAIVAAAELSHRYITDRF 385 Query: 421 LPDKAISVLDTACAKVALGQNATPARLEGVTRRLERLAAEIAALERETRSGASHATRLGE 480 LPDKAI ++D A +K+ + ++ P ++ + RRL +L E A++RE + RL Sbjct: 386 LPDKAIDLIDEAASKIKIEIDSKPEVMDKLDRRLIQLKIEREAVKREKDEASQ--KRLQL 443 Query: 481 LQAQHAQAIAEQTELQQRWEQERA-------LNGRIQAARAALEEANQESASSHDSAAAR 533 ++ + + E +L++ W+ E++ L I+ R +EEA ++S S Sbjct: 444 IEEEIEKLEREYADLEEIWKAEKSSAQGGQQLKEEIEKVRLQMEEATRKSDWQKVSELKY 503 Query: 534 SELQQLLAQL-----KEHQG---ETP-MVPVQVDGHVVAEIVAGWTGIPLGKMVKDEIKT 584 +L +L A L K+ G E P +V QV +AEIVA TGIP+ +M++ E + Sbjct: 504 GKLAELEAALEVQNKKDAAGVKTEKPKLVRTQVGAEEIAEIVARATGIPVSRMMQGEREK 563 Query: 585 VLGLDALLKERVLGQPQATAAVAQRVRTSRANLDDPGKPKGVFLFVGPSGVGKTETALAL 644 +L ++ +L ERV+GQ +A AV+ +R SRA L DP KP G F+F+GP+GVGKTE AL Sbjct: 564 LLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKTELCKAL 623 Query: 645 ADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDE 704 A L+ E +I I+MSE+ E H+V+ L G+PPGYVGY EGG LTEAVRR PYSV+LLDE Sbjct: 624 ASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDE 683 Query: 705 VEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIIILTSNVASSQLMQACLNKSAAELP 764 +EKAHPDV + QV D G M DG+GR +DFKNT+I++TSN+ S ++ + E Sbjct: 684 IEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKI-------QSMEDS 736 Query: 765 TPDELDVLIRPQLVKAFKPAFLGRL-KVIPYYPISDEVLEQIIKLKLGRIANRIAENHKA 823 P + + + ++ F+P F+ R+ +++ ++ + + + I K++L RI E A Sbjct: 737 DPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQL-----RILEQRLA 791 Query: 824 EFSYDKALVEAVLARCTEVD----SGARNVDNILNGSLLPEIAESVLARMAEGQGISRIK 879 + + EA L + E GAR + + + +++ +LA + + R+ Sbjct: 792 KLEIGLEISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVRVD 851 Query: 880 VSAGK 884 V G+ Sbjct: 852 VDHGQ 856 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 276 bits (707), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 172/434 (39%), Positives = 248/434 (57%), Gaps = 42/434 (9%) Query: 18 IATERAASLCMA-----RGQYE-VDLEHLFLALLENPQTDFSLIVRRSGISPDSLQADLE 71 IA E SL MA + ++E + +EHL LALL+NP + ++R ++ D DL Sbjct: 2 IAQELEVSLHMAFVEARQSRHEFITVEHLLLALLDNPSA--AEVLRACSVNID----DLR 55 Query: 72 HEISQFKNGNTRTPVLSSHLQTLFEHGWL---------IASLDGERPSIRSGHLLLALLT 122 ++ F NT T ++ + T G+ + S + + ++L+A+ Sbjct: 56 KTLTNFITDNTPTVPGTNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFG 115 Query: 123 QTELAQLAYRGSKLFARFKV-DELKHDLAKLTEGSVEAPALASAAASAAADGQADEQQGG 181 + + + Y + R V + + H + K + A A A D QA+ QQ Sbjct: 116 EKDSHAVYYLHQQGVTRLDVVNFISHGVRK------DQQADPQKAPEGAEDVQAEGQQKE 169 Query: 182 DPVGEMRAGGRTPALDQYTTNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILTG 241 P LDQ+T NL + A EGKIDP++GR+ E+ + + L RRR+NNP+L G Sbjct: 170 SP------------LDQFTQNLNKAAAEGKIDPLIGRESEVERVIQTLCRRRKNNPLLVG 217 Query: 242 EAGVGKTAVVEGLALRIAQDDVPQALQGVEIHTLDMGLLQAGASVKGEFENRLKGVIDEV 301 EAGVGKTA+ EGLA R+ Q DVP+ L+ +++LDMG L AG +G+FE RLK V+ ++ Sbjct: 218 EAGVGKTAIAEGLAWRVTQGDVPEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQL 277 Query: 302 KKSPHPIILFIDEAHTMIGAGGQAGQN-DAANLLKPALARGELRTIAATTWSEYKKYFEK 360 K SP+ ILFIDE HT+IGAG +G DA+NLLKPAL+ G+L+ I ATT++E++ FEK Sbjct: 278 KDSPNG-ILFIDEIHTIIGAGSASGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFEK 336 Query: 361 DAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFGVRVYDEAITEAVRLSHRYISGRQ 420 D AL+RRFQ I V EPT E +LR + E+H GV+ A+T A L+ R+I+ R Sbjct: 337 DHALSRRFQKIDVNEPTVEQTVQILRGLKSKFEEHHGVKYSASALTSAAELAARFINDRH 396 Query: 421 LPDKAISVLDTACA 434 LPDKAI V+D A A Sbjct: 397 LPDKAIDVIDEAGA 410 Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 174/306 (56%), Gaps = 11/306 (3%) Query: 562 VAEIVAGWTGIPLGKMVKDEIKTVLGLDALLKERVLGQPQATAAVAQRVRTSRANLDDPG 621 + EI++ IP + +D+ + +D LK V GQ A A++ ++ +RA L Sbjct: 429 IEEIISKIARIPPQSVNQDDRAKLQTIDRDLKNVVFGQDPAIEALSSAIKMARAGLGKTD 488 Query: 622 KPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVG 681 KP G FLF GP+GVGKTE A LA +L G E L+ +MSEY E H VS L G+PPGYVG Sbjct: 489 KPIGSFLFSGPTGVGKTEVAKQLAFIL-GIE--LVRFDMSEYMERHAVSRLIGAPPGYVG 545 Query: 682 YGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIII 741 + +GG+LTEAV + P++V+LLDE+EKAHPD+ + QV D G + D GR+ DF+N III Sbjct: 546 FDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDFRNVIII 605 Query: 742 LTSNVASSQLMQACLNKSAAELPTPDELDVLIRPQLVKAFKPAFLGRLK-VIPYYPISDE 800 +T+N + L + + + + + D+ + F P F RL +I + P+ +E Sbjct: 606 MTTNAGAESLQKRTIGFTEKKEAGDEMADI------KRMFTPEFRNRLDAIISFRPLDEE 659 Query: 801 VLEQIIKLKLGRIANRIAENHKAEFSYDKALVEAVLARCTEVDSGARNVDNILNGSLLPE 860 ++ +++ L ++ ++ E K E + +L + + + + GAR + ++ + Sbjct: 660 IILRVVDKFLMQLEEQLHEK-KVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKA 718 Query: 861 IAESVL 866 +A+ +L Sbjct: 719 LADELL 724 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,412,614 Number of extensions: 94571 Number of successful extensions: 511 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 501 Number of HSP's successfully gapped: 5 Length of query: 893 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 799 Effective length of database: 1,174,780 Effective search space: 938649220 Effective search space used: 938649220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)