BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0266.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...   731   0.0  
gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032...   528   e-151

>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG 60
           MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG
Sbjct: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG 60

Query: 61  FPASEIEAIDAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIA 120
           FPASEIEAIDAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIA
Sbjct: 61  FPASEIEAIDAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIA 120

Query: 121 RHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFR 180
           RHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFR
Sbjct: 121 RHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFR 180

Query: 181 SLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWYDV 240
           SLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWYDV
Sbjct: 181 SLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWYDV 240

Query: 241 PREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRML 300
           PREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRML
Sbjct: 241 PREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRML 300

Query: 301 GVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLAVH 360
           GVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLAVH
Sbjct: 301 GVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLAVH 360


>gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  528 bits (1359), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/362 (73%), Positives = 305/362 (84%), Gaps = 2/362 (0%)

Query: 1   MQATQRRFEPSVIERLFAAPHRFQFFQAVRMIELWFKRNGVAPERAVCDFLRFANRTALG 60
           MQATQRRFEPSVIERLFA PHRFQFFQAVRMIE WF+RNGV  ERAV DF+RFANRT LG
Sbjct: 1   MQATQRRFEPSVIERLFAVPHRFQFFQAVRMIECWFRRNGVPHERAVSDFVRFANRTVLG 60

Query: 61  FPASEIEAIDAVAS--SDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTER 118
           FPASEIEAID   S   +  SV  M Q+LR G+MKYVR+TPTFMGFLG SG+LPAHYTER
Sbjct: 61  FPASEIEAIDTYPSREGEAISVDNMEQALRCGQMKYVRITPTFMGFLGSSGSLPAHYTER 120

Query: 119 IARHQIEHRDEGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIG 178
           +ARHQIEHRDEGPRAFLD FSTRSLALFY AW+KYRL F Y++GRRD FLPLLLSLSG+G
Sbjct: 121 VARHQIEHRDEGPRAFLDAFSTRSLALFYHAWNKYRLTFHYDVGRRDTFLPLLLSLSGLG 180

Query: 179 FRSLRERLLEVDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIPLTIEQFVGQWY 238
           F SLR+RL +  G GVRDES+ +FA AL HRP SA YMQ+VL EYFS+PL IEQF+G WY
Sbjct: 181 FHSLRQRLQDGTGNGVRDESLGYFAGALRHRPPSALYMQKVLGEYFSVPLQIEQFIGYWY 240

Query: 239 DVPREHQTMLGSTNSALGTAMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSR 298
            VPR+HQT+LGSTNS LG AM G+RVWQRDLRMRLR+GP+A+ DFE+FLPG   S AL+R
Sbjct: 241 KVPRQHQTVLGSTNSVLGKAMVGERVWQRDLRMRLRIGPVAIRDFEKFLPGKEVSVALAR 300

Query: 299 MLGVFTGPTLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVATAPQQQDRADICYQLA 358
           MLG+F+G TLEYE+++ L A+DVRG+ L   R GGRLGWDSFVATAP+ +DRAD+ Y+++
Sbjct: 301 MLGMFSGSTLEYEVEVALLAQDVRGMTLGSMREGGRLGWDSFVATAPETRDRADLRYEIS 360

Query: 359 VH 360
           V 
Sbjct: 361 VQ 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,181,963
Number of extensions: 51535
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)