BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0264.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310079|ref|YP_003774171.1| hypothetical protein Hsero_0744...   325   1e-90
gi|300313321|ref|YP_003777413.1| hypothetical protein Hsero_4034...   264   2e-72

>gi|300310079|ref|YP_003774171.1| hypothetical protein Hsero_0744
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  325 bits (834), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MKGFAPSLFDRLMHESDRVSPNTVVSRLSIEELKDAVARDLEAMLNTRAVIPEQLFRHFP 60
           MKGFAPSLFDRLMHESDRVSPNTVVSRLSIEELKDAVARDLEAMLNTRAVIPEQLFRHFP
Sbjct: 1   MKGFAPSLFDRLMHESDRVSPNTVVSRLSIEELKDAVARDLEAMLNTRAVIPEQLFRHFP 60

Query: 61  ECSKSIIAYGLNDFAGMSLASLDDRAAICRSLEEAIARHEPRLRNVRASLEVQEGSINRL 120
           ECSKSIIAYGLNDFAGMSLASLDDRAAICRSLEEAIARHEPRLRNVRASLEVQEGSINRL
Sbjct: 61  ECSKSIIAYGLNDFAGMSLASLDDRAAICRSLEEAIARHEPRLRNVRASLEVQEGSINRL 120

Query: 121 NFAISALLVVNAAREAVSFDAVLQPSSLQYSISKGRATRIGV 162
           NFAISALLVVNAAREAVSFDAVLQPSSLQYSISKGRATRIGV
Sbjct: 121 NFAISALLVVNAAREAVSFDAVLQPSSLQYSISKGRATRIGV 162


>gi|300313321|ref|YP_003777413.1| hypothetical protein Hsero_4034
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  264 bits (675), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/162 (79%), Positives = 140/162 (86%)

Query: 1   MKGFAPSLFDRLMHESDRVSPNTVVSRLSIEELKDAVARDLEAMLNTRAVIPEQLFRHFP 60
           MKGFAPSLFD+LM E  R S   V++RLSIEELKD VARDLEAMLNTR+VI E     FP
Sbjct: 1   MKGFAPSLFDKLMSEGPRASVGAVINRLSIEELKDVVARDLEAMLNTRSVIAEASLEQFP 60

Query: 61  ECSKSIIAYGLNDFAGMSLASLDDRAAICRSLEEAIARHEPRLRNVRASLEVQEGSINRL 120
           ECS SII YGLNDFAGMSLASLDDR+AIC SLEEAI RHEPRLR V+A+LE+Q+GSINRL
Sbjct: 61  ECSNSIITYGLNDFAGMSLASLDDRSAICHSLEEAITRHEPRLRGVKATLEIQDGSINRL 120

Query: 121 NFAISALLVVNAAREAVSFDAVLQPSSLQYSISKGRATRIGV 162
           NFAISALLVVNAARE V+FDAVLQPS+LQYSISK R TRIGV
Sbjct: 121 NFAISALLVVNAARETVNFDAVLQPSTLQYSISKSRTTRIGV 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,793
Number of extensions: 13444
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)