BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0262.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310078|ref|YP_003774170.1| hypothetical protein Hsero_0743...   335   8e-94
gi|300313322|ref|YP_003777414.1| hypothetical protein Hsero_4035...   330   3e-92

>gi|300310078|ref|YP_003774170.1| hypothetical protein Hsero_0743
           [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score =  335 bits (860), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60
           MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF
Sbjct: 1   MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60

Query: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG 120
           TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG
Sbjct: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG 120

Query: 121 EILNETVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI 163
           EILNETVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI
Sbjct: 121 EILNETVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI 163


>gi|300313322|ref|YP_003777414.1| hypothetical protein Hsero_4035
           [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score =  330 bits (847), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 160/163 (98%), Positives = 162/163 (99%)

Query: 1   MAIDVYLQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60
           MAIDVY+QIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF
Sbjct: 1   MAIDVYIQIDGIKGESTDDLHKDWIECKTVDWEVLQPKSATASTGGGHTAERCEHKDIVF 60

Query: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG 120
           TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG
Sbjct: 61  TKVADLASPLLLQNSSSGKTIPKAKFEFMRADGKGERVRYFEIELTNVMISSVKPSIESG 120

Query: 121 EILNETVGLKYSTVKWKYTQQKKDGGTAGNTSGGWDLSTNKVI 163
           EILNETVGLKYSTVKWKYTQQK+ GGTAGNTSGGWDLSTNKVI
Sbjct: 121 EILNETVGLKYSTVKWKYTQQKQGGGTAGNTSGGWDLSTNKVI 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 503,314
Number of extensions: 18096
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)