BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0261.p (495 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742... 1024 0.0 gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036... 972 0.0 >gi|300310077|ref|YP_003774169.1| hypothetical protein Hsero_0742 [Herbaspirillum seropedicae SmR1] Length = 495 Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/495 (100%), Positives = 495/495 (100%) Query: 1 MSAQLHSETAAAPAAASASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVVSS 60 MSAQLHSETAAAPAAASASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVVSS Sbjct: 1 MSAQLHSETAAAPAAASASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVVSS 60 Query: 61 NLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNA 120 NLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNA Sbjct: 61 NLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNA 120 Query: 121 TKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQMS 180 TKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQMS Sbjct: 121 TKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQMS 180 Query: 181 RIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLT 240 RIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLT Sbjct: 181 RIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLT 240 Query: 241 LPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWCAA 300 LPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWCAA Sbjct: 241 LPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWCAA 300 Query: 301 IRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYA 360 IRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYA Sbjct: 301 IRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYA 360 Query: 361 AFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVE 420 AFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVE Sbjct: 361 AFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVE 420 Query: 421 DFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELS 480 DFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELS Sbjct: 421 DFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELS 480 Query: 481 VSLRLVAELPQAGKS 495 VSLRLVAELPQAGKS Sbjct: 481 VSLRLVAELPQAGKS 495 >gi|300313323|ref|YP_003777415.1| hypothetical protein Hsero_4036 [Herbaspirillum seropedicae SmR1] Length = 497 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/497 (94%), Positives = 487/497 (97%), Gaps = 2/497 (0%) Query: 1 MSAQLHSETAAAPAAA--SASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVV 58 MSAQ H E AA+ A A ++LLDDIVEQSKVAKS+SEHDRAKDLI+ELV+QVMEGTVVV Sbjct: 1 MSAQAHIEAAASAAPAAAGSTLLDDIVEQSKVAKSSSEHDRAKDLISELVSQVMEGTVVV 60 Query: 59 SSNLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 118 S NLSATLDARIAELD+LISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL Sbjct: 61 SENLSATLDARIAELDRLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKIL 120 Query: 119 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQ 178 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFG LLGDFEITRQPEDMYFIEQ Sbjct: 121 NATKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGALLGDFEITRQPEDMYFIEQ 180 Query: 179 MSRIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 238 MSRIAAASHAPF+TAASPELFGLES+++LGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG Sbjct: 181 MSRIAAASHAPFITAASPELFGLESFSELGKPRDLSKVFDTVEYAKWKSFRESEDSRYVG 240 Query: 239 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWC 298 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDG+DHSKYLWCNAAYAFG+KLTKAFEDFGWC Sbjct: 241 LTLPRFLGRLPFNPKDGTTVEGFNFVEDVDGTDHSKYLWCNAAYAFGSKLTKAFEDFGWC 300 Query: 299 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 358 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD Sbjct: 301 AAIRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTD 360 Query: 359 YAAFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 418 YAAFFGAQSAQKPKKYN+D+ANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN Sbjct: 361 YAAFFGAQSAQKPKKYNSDAANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASN 420 Query: 419 VEDFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 478 VEDFLNRWI+QYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE Sbjct: 421 VEDFLNRWIAQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDE 480 Query: 479 LSVSLRLVAELPQAGKS 495 LSVSLRLVAELPQAGKS Sbjct: 481 LSVSLRLVAELPQAGKS 497 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,389,282 Number of extensions: 55254 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 2 Length of query: 495 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 406 Effective length of database: 1,198,455 Effective search space: 486572730 Effective search space used: 486572730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)