BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0258.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310074|ref|YP_003774166.1| transmembrane protein [Herbaspi...   351   1e-98
gi|300313326|ref|YP_003777418.1| transmembrane protein [Herbaspi...   297   4e-82

>gi|300310074|ref|YP_003774166.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  351 bits (901), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MEALGLKKPDAPEVPDSMKQPRSVFIKLHASKALNLDAQKRPLALVVKIYKLKQNISFQQ 60
           MEALGLKKPDAPEVPDSMKQPRSVFIKLHASKALNLDAQKRPLALVVKIYKLKQNISFQQ
Sbjct: 1   MEALGLKKPDAPEVPDSMKQPRSVFIKLHASKALNLDAQKRPLALVVKIYKLKQNISFQQ 60

Query: 61  ASYETFLSPQKEKELLGADLLEVKEVTLVPGQRYEAVEKVSYEAGYVGVVALYVNPAQQR 120
           ASYETFLSPQKEKELLGADLLEVKEVTLVPGQRYEAVEKVSYEAGYVGVVALYVNPAQQR
Sbjct: 61  ASYETFLSPQKEKELLGADLLEVKEVTLVPGQRYEAVEKVSYEAGYVGVVALYVNPAQQR 120

Query: 121 WRLAFKADESEKSGITVGLQSCSVTVGAGAAAIDAQGQPLEKNLMLAPVQCPSS 174
           WRLAFKADESEKSGITVGLQSCSVTVGAGAAAIDAQGQPLEKNLMLAPVQCPSS
Sbjct: 121 WRLAFKADESEKSGITVGLQSCSVTVGAGAAAIDAQGQPLEKNLMLAPVQCPSS 174


>gi|300313326|ref|YP_003777418.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  297 bits (760), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 160/172 (93%)

Query: 1   MEALGLKKPDAPEVPDSMKQPRSVFIKLHASKALNLDAQKRPLALVVKIYKLKQNISFQQ 60
           +EALGLKK + PEVPD+MKQPRS+ IKLHAS+ALNLD Q+RPLALVVKIYKLKQNISFQQ
Sbjct: 38  LEALGLKKAEPPEVPDAMKQPRSIPIKLHASRALNLDPQQRPLALVVKIYKLKQNISFQQ 97

Query: 61  ASYETFLSPQKEKELLGADLLEVKEVTLVPGQRYEAVEKVSYEAGYVGVVALYVNPAQQR 120
           ASY+TFLS QKEKE LGADL+EVKE+TLVP QRYE +EKVSYEAGY+GVVAL+VNPAQQR
Sbjct: 98  ASYDTFLSTQKEKEALGADLMEVKEITLVPDQRYEIIEKVSYEAGYIGVVALFVNPAQQR 157

Query: 121 WRLAFKADESEKSGITVGLQSCSVTVGAGAAAIDAQGQPLEKNLMLAPVQCP 172
           WR+AFKADE+EK GITVG+QSCS+T+G GAAA+D QG+PLEK+L LAPVQCP
Sbjct: 158 WRIAFKADEAEKIGITVGVQSCSLTLGKGAAAVDTQGKPLEKDLTLAPVQCP 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,697
Number of extensions: 16119
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)