BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0256.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310072|ref|YP_003774164.1| transmembrane protein [Herbaspi...   503   e-144
gi|300313328|ref|YP_003777420.1| type IV / VI secretion system t...   435   e-123

>gi|300310072|ref|YP_003774164.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  503 bits (1294), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/263 (96%), Positives = 256/263 (97%), Gaps = 2/263 (0%)

Query: 1   MNMTSAPSLLDQDTFQSPSPTSASAP--VKANSLLDLMYDGFYALFMLRNGNAPLDEASF 58
           MNMTSAPSLLDQD+F S SP+  SA   VKANSLLDLMYDGFYALFMLRNGNAPLDEASF
Sbjct: 1   MNMTSAPSLLDQDSFPSSSPSPTSASAPVKANSLLDLMYDGFYALFMLRNGNAPLDEASF 60

Query: 59  AIKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRPLQLTM 118
           AIKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRPLQLTM
Sbjct: 61  AIKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRPLQLTM 120

Query: 119 FGDQLAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEKLGYLTARLGD 178
           FGDQLAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEKLGYLTARLGD
Sbjct: 121 FGDQLAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEKLGYLTARLGD 180

Query: 179 EIAHMKGKSAGFAPHWARPDAIVNKLRNDVPLWAVGSLFALIALFAYLGLNWMLTSGTEN 238
           EIAHMKGKSAGFAPHWARPDAIVNKLRNDVPLWAVGSLFALIALFAYLGLNWMLTSGTEN
Sbjct: 181 EIAHMKGKSAGFAPHWARPDAIVNKLRNDVPLWAVGSLFALIALFAYLGLNWMLTSGTEN 240

Query: 239 GLAGYTDIVKLAPRTANLTITLP 261
           GLAGYTDIVKLAPRTANLTITLP
Sbjct: 241 GLAGYTDIVKLAPRTANLTITLP 263


>gi|300313328|ref|YP_003777420.1| type IV / VI secretion system
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  435 bits (1118), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/259 (79%), Positives = 227/259 (87%), Gaps = 2/259 (0%)

Query: 3   MTSAPSLLDQDTFQSPSPTSASAPVKANSLLDLMYDGFYALFMLRNGNAPLDEASFAIKM 62
           MTS PSLLD    Q P   +  AP+ A SLLDL+YDGFYALFML+NG  P+D+ SF  KM
Sbjct: 1   MTSPPSLLDPTPLQMP--VTTGAPINARSLLDLIYDGFYALFMLKNGGTPVDDVSFESKM 58

Query: 63  QKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRPLQLTMFGDQ 122
           QKFLG+VERNAKK++ SP+D+YAAKYAFCASVDEIILRS F IR AWERRPLQLTMFGDQ
Sbjct: 59  QKFLGEVERNAKKINASPDDIYAAKYAFCASVDEIILRSKFGIRPAWERRPLQLTMFGDQ 118

Query: 123 LAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEKLGYLTARLGDEIAH 182
           LAGENFF +LE+LR+ GNAH+QALEVFHMCLLLGFQGKYALEGPEKL YLTARLGDEIAH
Sbjct: 119 LAGENFFHKLEELRLHGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAH 178

Query: 183 MKGKSAGFAPHWARPDAIVNKLRNDVPLWAVGSLFALIALFAYLGLNWMLTSGTENGLAG 242
           +KGKSAGFAPHW RPDA++NKLRNDVPLW V SLFALI LFAYLG+ WML S TENGLAG
Sbjct: 179 LKGKSAGFAPHWERPDAVINKLRNDVPLWVVISLFALITLFAYLGVRWMLISDTENGLAG 238

Query: 243 YTDIVKLAPRTANLTITLP 261
           Y+DIVKLAPRTANLTITLP
Sbjct: 239 YSDIVKLAPRTANLTITLP 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,850
Number of extensions: 35237
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)