BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0254.p
         (499 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310068|ref|YP_003774160.1| oxidoreductase, oxygen dependen...  1037   0.0  

>gi|300310068|ref|YP_003774160.1| oxidoreductase, oxygen dependent,
           FAD-dependent protein [Herbaspirillum seropedicae SmR1]
          Length = 499

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/499 (100%), Positives = 499/499 (100%)

Query: 1   MEDSKALPRRKFLQTGAALLYAASVPGVVQAAPALHTPKNLRALRNSLHGRLILPGEMGY 60
           MEDSKALPRRKFLQTGAALLYAASVPGVVQAAPALHTPKNLRALRNSLHGRLILPGEMGY
Sbjct: 1   MEDSKALPRRKFLQTGAALLYAASVPGVVQAAPALHTPKNLRALRNSLHGRLILPGEMGY 60

Query: 61  AMAAAPNNARYADILPRAVAMCADAHDVQLCLRWAADHREKFAVRSGGHNYAGFSTTTGL 120
           AMAAAPNNARYADILPRAVAMCADAHDVQLCLRWAADHREKFAVRSGGHNYAGFSTTTGL
Sbjct: 61  AMAAAPNNARYADILPRAVAMCADAHDVQLCLRWAADHREKFAVRSGGHNYAGFSTTTGL 120

Query: 121 LIDVKAMNKVWYDLAKNRGYILAGASNQDMANTFSGTDFAIPSGRCPTVGASGLVLGGGW 180
           LIDVKAMNKVWYDLAKNRGYILAGASNQDMANTFSGTDFAIPSGRCPTVGASGLVLGGGW
Sbjct: 121 LIDVKAMNKVWYDLAKNRGYILAGASNQDMANTFSGTDFAIPSGRCPTVGASGLVLGGGW 180

Query: 181 GFSATHAGLTCDSLVQTDVVLANGQQVSADAQGPHRDLFWALRGGGGGNFGINTAFSFEL 240
           GFSATHAGLTCDSLVQTDVVLANGQQVSADAQGPHRDLFWALRGGGGGNFGINTAFSFEL
Sbjct: 181 GFSATHAGLTCDSLVQTDVVLANGQQVSADAQGPHRDLFWALRGGGGGNFGINTAFSFEL 240

Query: 241 HEVKDDVTIFNIVWPGQQQIELLTLLQEIQSNHATQISTRTKAYPDAPGPFPRREQLRVT 300
           HEVKDDVTIFNIVWPGQQQIELLTLLQEIQSNHATQISTRTKAYPDAPGPFPRREQLRVT
Sbjct: 241 HEVKDDVTIFNIVWPGQQQIELLTLLQEIQSNHATQISTRTKAYPDAPGPFPRREQLRVT 300

Query: 301 TLGQFFGPKDKALEALAPALKLVKPLQSDIRQMRYWQARDYLITDDPNGMYDLRSSYVAE 360
           TLGQFFGPKDKALEALAPALKLVKPLQSDIRQMRYWQARDYLITDDPNGMYDLRSSYVAE
Sbjct: 301 TLGQFFGPKDKALEALAPALKLVKPLQSDIRQMRYWQARDYLITDDPNGMYDLRSSYVAE 360

Query: 361 ALPPQALETMLRYMMKWPGGSLLPENMGILFAIGGKVRDVAADATAYVHRNANYIFEMEC 420
           ALPPQALETMLRYMMKWPGGSLLPENMGILFAIGGKVRDVAADATAYVHRNANYIFEMEC
Sbjct: 361 ALPPQALETMLRYMMKWPGGSLLPENMGILFAIGGKVRDVAADATAYVHRNANYIFEMEC 420

Query: 421 AWAPIDKPDVVRRQQEWLTEYFAAMQPYMLPQSYVNFPSRELPNWARAYYGSNLERLKHV 480
           AWAPIDKPDVVRRQQEWLTEYFAAMQPYMLPQSYVNFPSRELPNWARAYYGSNLERLKHV
Sbjct: 421 AWAPIDKPDVVRRQQEWLTEYFAAMQPYMLPQSYVNFPSRELPNWARAYYGSNLERLKHV 480

Query: 481 KRQYDPSNLFSFEQSIPRA 499
           KRQYDPSNLFSFEQSIPRA
Sbjct: 481 KRQYDPSNLFSFEQSIPRA 499


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,408,087
Number of extensions: 50938
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,198,455
Effective search space: 491366550
Effective search space used: 491366550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)