BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0241.p (547 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis tra... 1082 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 422 e-119 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 411 e-116 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 410 e-115 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 402 e-113 >gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] Length = 547 Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/547 (99%), Positives = 546/547 (99%) Query: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV Sbjct: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 Query: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL 120 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL Sbjct: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL 120 Query: 121 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV 180 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV Sbjct: 121 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV 180 Query: 181 EEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 240 EEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE Sbjct: 181 EEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 240 Query: 241 VTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGSL 300 VTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGSL Sbjct: 241 VTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGSL 300 Query: 301 QETASAMEQLTATVKQNADNAREANRLAENASQVAARGGAAVGRVVDTMNSISASSHKIV 360 QETASAMEQLTATVKQNADNAREANRLA+NASQVAARGGAAVGRVVDTMNSISASSHKIV Sbjct: 301 QETASAMEQLTATVKQNADNAREANRLADNASQVAARGGAAVGRVVDTMNSISASSHKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALIN 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALIN Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALIN 420 Query: 421 ESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQIDE 480 ESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQIDE Sbjct: 421 ESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQIDE 480 Query: 481 ATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQTAPQHLRSAEREDAAVSGPVH 540 ATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQ APQHLRSAEREDAAVSGPVH Sbjct: 481 ATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQNAPQHLRSAEREDAAVSGPVH 540 Query: 541 MEALSYA 547 MEALSYA Sbjct: 541 MEALSYA 547 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 422 bits (1084), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/523 (50%), Positives = 351/523 (67%), Gaps = 20/523 (3%) Query: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 MKNLKIG RL +GF A+L+L+ + A G+ ++ + D +T + AL K + AV Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRI------ALKKERDAV 54 Query: 61 GLRAIAARNLTLVQSAADQKNDLD-LVGSSQQDIDAGMAELGRLMQH---PASSPQEREM 116 A N V++ A K+D D Q+ IDA A + +L + + +E+ + Sbjct: 55 QWHAAIKENG--VRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRL 112 Query: 117 LEKLRQLEAQYLPVAVNIVKLATSQQTEAAR----ASLVKDCMPILNRVIAQVEQFNKLL 172 +++ +L A Y +I + T+ AR +LVK M + + F K + Sbjct: 113 FDEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVK-MMDDYADGVLRYADFQKQV 171 Query: 173 RKNSEANVEEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQS 232 + A + Y + +LA + LG +AWLLTRSI+RPL QAV++A++V + Sbjct: 172 IDQTAAAINRD---YRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAA 228 Query: 233 GDLGSRIEVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNR 292 GDL SRI+ +S+DE G+L++ALK MN +L++IVG VR GT+TI AS EI GN+DLS R Sbjct: 229 GDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSAR 288 Query: 293 TEQQAGSLQETASAMEQLTATVKQNADNAREANRLAENASQVAARGGAAVGRVVDTMNSI 352 TE QAGSL+ETASAMEQLT+TVKQNADNAR+AN LA +ASQVA +GGA V +VV TM +I Sbjct: 289 TEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAI 348 Query: 353 SASSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAA 412 ASS KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 349 HASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 408 Query: 413 KEIEALINESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQIN 472 KEI+ LI++SV KV G + V+ AG TM EVV+S+ VT ++ +I+ AS EQ+ G+EQ+N Sbjct: 409 KEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVN 468 Query: 473 RAVAQIDEATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKL 515 A+ IDE TQQNAALVEQAAAAA SMQ Q+ +LT+ VS+F+L Sbjct: 469 LAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 411 bits (1056), Expect = e-116, Method: Compositional matrix adjust. Identities = 263/535 (49%), Positives = 356/535 (66%), Gaps = 31/535 (5%) Query: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIV-----FLTSVDEGKLEALSK 55 NLKI H+L F VL+ ++ + F +++ +N +L S+D ALSK Sbjct: 4 FYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSID-----ALSK 58 Query: 56 VQFAVGLRAIAARNLTLVQS-AADQKNDLDLVGSSQQDIDAGMAEL-------GRLMQHP 107 + A+ +R+ + Q AD++ + +S++ D MA L G+L+ Sbjct: 59 MSLALA----RSRSFDMQQLLTADKQEE----KASRERADKQMATLLKEVARYGKLV--- 107 Query: 108 ASSPQEREMLEKLRQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQ 167 S P+E+E+ ++ + A Y + L Q +AA A + P+ ++ Q+ + Sbjct: 108 -SEPREKELYPEIERNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGE 166 Query: 168 FNKLLRKNSEANVEEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVA 227 +++ K + + +A+ Y A +LA + L ++W + R ++RPLA AV +A Sbjct: 167 LSEVNSKGAALSDADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIA 226 Query: 228 QSVQSGDLGSRIEVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNM 287 + V +GDL + I +DE GQL+ AL+ MN +L+NIV EVRQGTDTI AS EI GNM Sbjct: 227 RQVAAGDLTADIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNM 286 Query: 288 DLSNRTEQQAGSLQETASAMEQLTATVKQNADNAREANRLAENASQVAARGGAAVGRVVD 347 DLS+RTEQQAG+L+ETASAME+LT+TV+QN+DNAR+AN+LA NAS+VA GG VG+VV Sbjct: 287 DLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVA 346 Query: 348 TMNSISASSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQR 407 TM++I+ SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQR Sbjct: 347 TMSAINDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQR 406 Query: 408 SAVAAKEIEALINESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSG 467 SA AA EI+ALI++SVAKV TG K V EAG TM+EVV S+K V+ I+ +I+AA AEQT G Sbjct: 407 SAAAAHEIKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQG 466 Query: 468 LEQINRAVAQIDEATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQTAP 522 +EQIN AV Q+DE TQQNAALVEQAAAAA ++Q+Q+ L+E VS+F+L AQ P Sbjct: 467 IEQINNAVVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD-AQHVP 520 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust. Identities = 265/522 (50%), Positives = 357/522 (68%), Gaps = 18/522 (3%) Query: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQ---VSRLNDRIVFLTSVDEGKLEALSKVQ 57 + ++KI RLG FAA+++++ +A G++ VS D IV V K+ +++ Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYV---KVALGTQIT 60 Query: 58 FAVGLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREML 117 V A + RN + ++ +QK LD + + + +AE M+ ++P+ E+L Sbjct: 61 DKVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAE----MEKRTNTPRGSELL 116 Query: 118 EKLRQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQF----NKLLR 173 L+Q A Y + +V L Q+ + A A L +P+ ++ A V++ + L+ Sbjct: 117 AALKQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMD 176 Query: 174 KNSEANVEEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSG 233 K++E + +A + ML S A+ L + A L+TRSI+RPL +AV VA +V +G Sbjct: 177 KSAERASAASSSAINI----MLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAG 232 Query: 234 DLGSRIEVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRT 293 DL +IE TSKDE G L+ ALK MND+L IV EVR GTDTI AS EI GN+DLS+RT Sbjct: 233 DLTVQIEATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRT 292 Query: 294 EQQAGSLQETASAMEQLTATVKQNADNAREANRLAENASQVAARGGAAVGRVVDTMNSIS 353 EQQAG+L+ETASAME+LT+TV+QNADNAR+AN LAE ASQVA +GG+ VG VV TM I+ Sbjct: 293 EQQAGALEETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQIN 352 Query: 354 ASSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAK 413 +S KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA AAK Sbjct: 353 DASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 412 Query: 414 EIEALINESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINR 473 EI++LI+ SV +V +G + V +AG+TM EVV S+K VT ++ +I+AAS EQ+ G+EQIN+ Sbjct: 413 EIKSLIDASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQ 472 Query: 474 AVAQIDEATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKL 515 A+ Q+DE TQQNAALVEQAAAAA S+Q+QS L++ V IF+L Sbjct: 473 AIVQMDEVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRL 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 402 bits (1033), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/519 (48%), Positives = 352/519 (67%), Gaps = 8/519 (1%) Query: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 NLKI +L + FAAV++L V + F ++++ +N + + ++A +Q ++ Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL 120 I+ + + A++++ L + S+ DI +A+ + S +E+ + EK Sbjct: 64 PRMRISELQMVTAATPAEREDALKAI-KSRLDI---LAKQRAAYEAQISEAEEKVLYEKF 119 Query: 121 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV 180 + A YL + + +++ + E ARA D +I +++ K+ S+ + Sbjct: 120 SKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSD 179 Query: 181 EEAEAAYTLAK-WTM-LAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSR 238 + AE Y A W + L A++ + LG +A ++ R++SRPL +AV+VA+ V GDL Sbjct: 180 DMAEQVYRSATLWIIGLLAAIVVIALG--LAVMVARAVSRPLNEAVAVAERVAQGDLTMD 237 Query: 239 IEVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAG 298 I TS DE G LM +L+ MNDSL IVGEVR GTDTI AS EI GN+DLS+RTE+QAG Sbjct: 238 IRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAG 297 Query: 299 SLQETASAMEQLTATVKQNADNAREANRLAENASQVAARGGAAVGRVVDTMNSISASSHK 358 SL+ETASAME+LTATVKQNADNAR+AN+LA +AS +A +GGA VG+VV TM I+ SS++ Sbjct: 298 SLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNR 357 Query: 359 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEAL 418 I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI+ L Sbjct: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 417 Query: 419 INESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQI 478 I++SV KV G + V AG+TM EVV S++ VT ++ +ISAAS EQ++G+E+INRA+ Q+ Sbjct: 418 IDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQM 477 Query: 479 DEATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSR 517 DE TQQNAALVE+AAAAA S+Q Q+ L++VVS+FKL R Sbjct: 478 DEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.315 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,003,899 Number of extensions: 30052 Number of successful extensions: 453 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 72 Length of query: 547 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 457 Effective length of database: 1,193,720 Effective search space: 545530040 Effective search space used: 545530040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)