BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0232.p
         (709 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor ...  1436   0.0  

>gi|300310047|ref|YP_003774139.1| TonB-dependent copper receptor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 709

 Score = 1436 bits (3716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/709 (98%), Positives = 701/709 (98%)

Query: 1   MQSTPCACAIALAFTVCGDVFASSDEQTPLPAITVRSAKPSVTPPSADSAALLNEQPGYA 60
           MQSTPCACAIALAFTVCGDVFAS DEQTPLPAITVR AKPS+TPPSADSAALLN+QPGYA
Sbjct: 1   MQSTPCACAIALAFTVCGDVFASGDEQTPLPAITVRGAKPSMTPPSADSAALLNDQPGYA 60

Query: 61  TAAGGGVSALPVLNGFAADRLKIRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT 120
           TAAGGGVSALPVLNGFAADRLK RLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT
Sbjct: 61  TAAGGGVSALPVLNGFAADRLKTRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT 120

Query: 121 PVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNAAVASDQLS 180
           PVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNA VASDQLS
Sbjct: 121 PVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNATVASDQLS 180

Query: 181 VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQGFPN 240
           VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQGFPN
Sbjct: 181 VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQGFPN 240

Query: 241 EYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQGRDLG 300
           EYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQGRDLG
Sbjct: 241 EYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQGRDLG 300

Query: 301 YALRADIDLAADSSSVLRVGHEYHRFRLDDVWPPVAGSMMMSPRTYVNINGGKRDRLALF 360
           YALRADIDLAADSSSVLRVGHEYH F LDDVWPPVAGSMMMSPRTYVNINGGKRDR ALF
Sbjct: 301 YALRADIDLAADSSSVLRVGHEYHSFHLDDVWPPVAGSMMMSPRTYVNINGGKRDRFALF 360

Query: 361 AEWEHKLDARWSSLLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKTDNNI 420
           AEWEHKLDARWS+LLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKTDNNI
Sbjct: 361 AEWEHKLDARWSTLLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKTDNNI 420

Query: 421 DLTALARFEADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVGDIDL 480
           DLTALAR EADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVGDIDL
Sbjct: 421 DLTALARLEADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVGDIDL 480

Query: 481 KPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFNPYRV 540
           KPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFNPYRV
Sbjct: 481 KPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFNPYRV 540

Query: 541 AAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNLYHMM 600
           AAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNLYHMM
Sbjct: 541 AAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNLYHMM 600

Query: 601 PLNILAALEQTWGAWTNRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQHISVS 660
           PLNILAALEQTWGAW+NRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQHISV+
Sbjct: 601 PLNILAALEQTWGAWSNRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQHISVT 660

Query: 661 AGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF 709
           AGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF
Sbjct: 661 AGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF 709


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,311,667
Number of extensions: 101292
Number of successful extensions: 337
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 617
Effective length of database: 1,184,250
Effective search space: 730682250
Effective search space used: 730682250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)